| Code name | RE_03G04 | |||
|---|---|---|---|---|
| Locus | AT1G27730 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ||||
| sequence |
>RE_03G04_681bp ATGGCGCTCGAGGCTCTTACATCACCAGGATTAGCTTCTCCGATTCCTCCTTTGTTCGAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACAAAGG GTAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACTGAGGAAGAGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCG TCAGCCTCCTCCTCCTCCGGCGGTGGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGACGTTCTCTTCTTACCAAGCTCTCGGTGGTCACAAGGCA AGCCACCGTAAGAACTTATCACAGACTCTCTCCGGCGGAGGAGATGATCATTCAACCTCGTCGGCGACAACCACATCCGCCGTGACTACTGGAAGTGGGA AATCACACGTTTGCACCATCTGTAACAAGTCTTTTCCTTCCGGTCAAGCTCTCGGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACATCAACAC TAGTAGCGTGTCCAACTCCGAAGGTGCGGGGTCCACTAGCCACGTTAGCAGTAGCCACCGTGGGTTTGACCTCAACATCCCTCCGATCCCTGAATTCTCG ATGGTCAACGGAGACGACGAAGTCATGAGCCCTATGCCGGCGAAGAAGCCTCGGTTTGACTTTCCGGTCAAACTTCAACTT >RE_03G04_translated MALEALTSPGLASPIPPLFEDSSVFHGVEHWTKGKRSKRSRSDFHHQNLTEEEYLAFCLMLLARDNRQPPPPPAVEKLSYKCSVCDKTFSSYQALGGHKA SHRKNLSQTLSGGGDDHSTSSATTTSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCHYEGNNNINTSSVSNSEGAGSTSHVSSSHRGFDLNIPPIPEFS MVNGDDEVMSPMPAKKPRFDFPVKLQL |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 680/681 (99.9%)（アミノ酸配列で226/227 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G27 ATGGCGCTCGAGGCTCTTACATCACCAAGATTAGCTTCTCCGATTCCTCCTTTGTTCGAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACAAAGG
::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G ATGGCGCTCGAGGCTCTTACATCACCAGGATTAGCTTCTCCGATTCCTCCTTTGTTCGAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACAAAGG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G27 GTAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACTGAGGAAGAGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G GTAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACTGAGGAAGAGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G27 TCAGCCTCCTCCTCCTCCGGCGGTGGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGACGTTCTCTTCTTACCAAGCTCTCGGTGGTCACAAGGCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TCAGCCTCCTCCTCCTCCGGCGGTGGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGACGTTCTCTTCTTACCAAGCTCTCGGTGGTCACAAGGCA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G27 AGCCACCGTAAGAACTTATCACAGACTCTCTCCGGCGGAGGAGATGATCATTCAACCTCGTCGGCGACAACCACATCCGCCGTGACTACTGGAAGTGGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G AGCCACCGTAAGAACTTATCACAGACTCTCTCCGGCGGAGGAGATGATCATTCAACCTCGTCGGCGACAACCACATCCGCCGTGACTACTGGAAGTGGGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G27 AATCACACGTTTGCACCATCTGTAACAAGTCTTTTCCTTCCGGTCAAGCTCTCGGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACATCAACAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G AATCACACGTTTGCACCATCTGTAACAAGTCTTTTCCTTCCGGTCAAGCTCTCGGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACATCAACAC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G27 TAGTAGCGTGTCCAACTCCGAAGGTGCGGGGTCCACTAGCCACGTTAGCAGTAGCCACCGTGGGTTTGACCTCAACATCCCTCCGATCCCTGAATTCTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TAGTAGCGTGTCCAACTCCGAAGGTGCGGGGTCCACTAGCCACGTTAGCAGTAGCCACCGTGGGTTTGACCTCAACATCCCTCCGATCCCTGAATTCTCG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680
AT1G27 ATGGTCAACGGAGACGACGAAGTCATGAGCCCTATGCCGGCGAAGAAGCCTCGGTTTGACTTTCCGGTCAAACTTCAACTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G ATGGTCAACGGAGACGACGAAGTCATGAGCCCTATGCCGGCGAAGAAGCCTCGGTTTGACTTTCCGGTCAAACTTCAACTT
610 620 630 640 650 660 670 680
10 20 30 40 50 60 70 80 90 100
AT1G27 MALEALTSPRLASPIPPLFEDSSVFHGVEHWTKGKRSKRSRSDFHHQNLTEEEYLAFCLMLLARDNRQPPPPPAVEKLSYKCSVCDKTFSSYQALGGHKA
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G MALEALTSPGLASPIPPLFEDSSVFHGVEHWTKGKRSKRSRSDFHHQNLTEEEYLAFCLMLLARDNRQPPPPPAVEKLSYKCSVCDKTFSSYQALGGHKA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G27 SHRKNLSQTLSGGGDDHSTSSATTTSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCHYEGNNNINTSSVSNSEGAGSTSHVSSSHRGFDLNIPPIPEFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G SHRKNLSQTLSGGGDDHSTSSATTTSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCHYEGNNNINTSSVSNSEGAGSTSHVSSSHRGFDLNIPPIPEFS
110 120 130 140 150 160 170 180 190 200
210 220
AT1G27 MVNGDDEVMSPMPAKKPRFDFPVKLQL
:::::::::::::::::::::::::::
RE_03G MVNGDDEVMSPMPAKKPRFDFPVKLQL
210 220
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