| Code name | RE_03G05 | |||
|---|---|---|---|---|
| Locus | AT3G19580 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ->RE_0408(0420_アミノ酸配列100%一致) | |||
| sequence |
>RE_03G05_819bp ATGGCCCTCGAAGCGATGAACACTCCAACTTCTTCTTTCACCAGAATCGAAACGAAAGAAGATTTGATGAACGACGCCGTTTTCATTGAGCCGTGGCTTA AACGCAAACGCTCCAAACGTCAGCGTTCTCACAGCCCTTCTTCGTCTTCTTCCTCACCGCCTCGATCTCGACCCAAATCCCAGAATCAAGATCTTACGGA AGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTAAAGATCAACCGTCGCAAACGCGATTTCATCAACAGTCGCAATCGTTAACGCCGCCGCCAGAA TCAAAGAACCTTCCGTACAAGTGTAACGTCTGTGAAAAAGCGTTTCCTTCCTATCAGGCTTTAGGCGGTCACAAAGCAAGTCACCGAATCAAACCACCAA CCGTAATCTCAACAACCGCCGATGATTCAACAGCTCCGACCATCTCCATCGTCGCCGGAGAAAAACATCCGATTGCTGCCTCCGGAAAGATCCACGAGTG TTCAATCTGTCATAAAGTGTTTCCGACGGGTCAAGCTTTAGGCGGTCACAAACGTTGTCACTACGAAGGCAACCTCGGCGGCGGAGGAGGAGGAGGAAGC AAATCAATCAGTCACAGTGGAAGCGTGTCGAGCACGGTATCGGAAGAAAGGAGCCACCGTGGATTCATCGATCTAAACCTACCGGCGTTACCTGAACTCA GCCTTCATCACAATCCAATCGTCGACGAAGAGATCTTGAGTCCGTTGACCGGTAAAAAACCGCTTTTGTCGACCGATCACGACCAAGTCATCAAGAAAGA AGATTTATCTTTAAAAATC >RE_03G05_translated MALEAMNTPTSSFTRIETKEDLMNDAVFIEPWLKRKRSKRQRSHSPSSSSSSPPRSRPKSQNQDLTEEEYLALCLLMLAKDQPSQTRFHQQSQSLTPPPE SKNLPYKCNVCEKAFPSYQALGGHKASHRIKPPTVISTTADDSTAPTISIVAGEKHPIAASGKIHECSICHKVFPTGQALGGHKRCHYEGNLGGGGGGGS KSISHSGSVSSTVSEERSHRGFIDLNLPALPELSLHHNPIVDEEILSPLTGKKPLLSTDHDQVIKKEDLSLKI |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 818/819 (99.9%)（アミノ酸配列で272/273 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G19 ATGGCCCTCGAAGCGATGAACACTCCAACTTCTTCTTTCACCAGAATCGAAACGAAAGAAGATTTGATGAACGACGCCGTTTTCATTGAGCCGTGGCTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G ATGGCCCTCGAAGCGATGAACACTCCAACTTCTTCTTTCACCAGAATCGAAACGAAAGAAGATTTGATGAACGACGCCGTTTTCATTGAGCCGTGGCTTA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G19 AACGCAAACGCTCCAAACGTCAGCGTTCTCACAGCCCTTCTTCGTCTTCTTCCTCACCGCCTCGATCTCGACCCAAATCCCAGAATCAAGATCTTACGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G AACGCAAACGCTCCAAACGTCAGCGTTCTCACAGCCCTTCTTCGTCTTCTTCCTCACCGCCTCGATCTCGACCCAAATCCCAGAATCAAGATCTTACGGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G19 AGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTAAAGATCAACCGTCGCAAACGCGATTTCATCAACAGTCGCAATCGTTAACGCCGCCGCCAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G AGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTAAAGATCAACCGTCGCAAACGCGATTTCATCAACAGTCGCAATCGTTAACGCCGCCGCCAGAA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G19 TCAAAGAACCTTCCGTACAAGTGTAACGTCTGTGAAAAAGCGTTTCCTTCCTATCAGGCTTTAGGCGGTCACAAAGCAAGTCACCGAATCAAACCACCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TCAAAGAACCTTCCGTACAAGTGTAACGTCTGTGAAAAAGCGTTTCCTTCCTATCAGGCTTTAGGCGGTCACAAAGCAAGTCACCGAATCAAACCACCAA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G19 CCGTAATCTCAACAACCGCCGATGATTCAACAGCTCCGACCATCTCCATCGTCGCCGGAGAAAAACATCCGATTGCTGCCTCCGGAAAGATCCACGAGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G CCGTAATCTCAACAACCGCCGATGATTCAACAGCTCCGACCATCTCCATCGTCGCCGGAGAAAAACATCCGATTGCTGCCTCCGGAAAGATCCACGAGTG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G19 TTCAATCTGTCATAAAGTGTTTCCGACGGGTCAAGCTTTAGGCGGTCACAAACGTTGTCACTACGAAGGCAACCTCGGCGGCGGAGGAGGAGGAGGAAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TTCAATCTGTCATAAAGTGTTTCCGACGGGTCAAGCTTTAGGCGGTCACAAACGTTGTCACTACGAAGGCAACCTCGGCGGCGGAGGAGGAGGAGGAAGC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G19 AAATCAATCAGTCACAGTGGAAGCGTGTCGAGCACGGTATCGGAAGAAAGGAGCCACCGTGGATTCATCGATCTAAACCTACCGGCGTTACCTGAACTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G AAATCAATCAGTCACAGTGGAAGCGTGTCGAGCACGGTATCGGAAGAAAGGAGCCACCGTGGATTCATCGATCTAAACCTACCGGCGTTACCTGAACTCA
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT3G19 GCCTTCATCACAATCCAATCGTCGACGAAGAGATCTTGAGTCCGTTGACCGGTAAAAAACCGCTTTTGTTGACCGATCACGACCAAGTCATCAAGAAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
RE_03G GCCTTCATCACAATCCAATCGTCGACGAAGAGATCTTGAGTCCGTTGACCGGTAAAAAACCGCTTTTGTCGACCGATCACGACCAAGTCATCAAGAAAGA
710 720 730 740 750 760 770 780 790 800
810
AT3G19 AGATTTATCTTTAAAAATC
:::::::::::::::::::
RE_03G AGATTTATCTTTAAAAATC
810
10 20 30 40 50 60 70 80 90 100
AT3G19 MALEAMNTPTSSFTRIETKEDLMNDAVFIEPWLKRKRSKRQRSHSPSSSSSSPPRSRPKSQNQDLTEEEYLALCLLMLAKDQPSQTRFHQQSQSLTPPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G MALEAMNTPTSSFTRIETKEDLMNDAVFIEPWLKRKRSKRQRSHSPSSSSSSPPRSRPKSQNQDLTEEEYLALCLLMLAKDQPSQTRFHQQSQSLTPPPE
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G19 SKNLPYKCNVCEKAFPSYQALGGHKASHRIKPPTVISTTADDSTAPTISIVAGEKHPIAASGKIHECSICHKVFPTGQALGGHKRCHYEGNLGGGGGGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G SKNLPYKCNVCEKAFPSYQALGGHKASHRIKPPTVISTTADDSTAPTISIVAGEKHPIAASGKIHECSICHKVFPTGQALGGHKRCHYEGNLGGGGGGGS
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270
AT3G19 KSISHSGSVSSTVSEERSHRGFIDLNLPALPELSLHHNPIVDEEILSPLTGKKPLLLTDHDQVIKKEDLSLKI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
RE_03G KSISHSGSVSSTVSEERSHRGFIDLNLPALPELSLHHNPIVDEEILSPLTGKKPLLSTDHDQVIKKEDLSLKI
210 220 230 240 250 260 270
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