| Code name | RE_03G06 | |||
|---|---|---|---|---|
| Locus | AT5G25160 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ||||
| sequence |
>RE_03G06_705bp ATGGACGCTTCAATAGTTTCCTCATCCACTGCTTTTCCATATCAAGATTCTCTAAACCAGAGCATCGAAGACGAAGAAAGAGACGTTCATAATTCTAGTC ACGAACTCAATCTCATCGACTGCATAGACGACACAACGAGTATCGTTAACGAATCTACAACATCCACAGAACAAAAGCTTTTCTCATGCAACTATTGTCA AAGAACTTTCTATAGCTCACAAGCACTTGGTGGTCACCAAAACGCACACAAGAGAGAGAGAACGTTGGCGAAGAGAGGACAACGTATGGCAGCGTCAGCC TCAGCTTTTGGACATCCTTACGGTTTCTCTCCACTTCCTTTCCACGGACGGTACAACAACCATAGGTCTTTAGGGATCCAAGCGCATTCGATAAGCCACA AGCTAAGTTCTTATAACGGGTTTGGTGGTCACTATGGTCAGATCAACTGGTCAAGACTTCCATTTGATCAACAACCAGCCATAGGTAAATTTCCCTCAAT GGATAATTTTCATCATCATCATCATCAGATGATGATGATGGCTCCTTCAGTAAATTCACGGTCCAATAACATCGATAGCCCAAGCAACACAGGACGGGTT CTAGAAGGGTCACCGACTCTTGAACAATGGCACGGAGACAAAGGATTGTTGTTAAGTACAAGTCATCATGAAGAGCAGCAGAAACTTGACTTGTCCCTCA AGCTT >RE_03G06_translated MDASIVSSSTAFPYQDSLNQSIEDEERDVHNSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASA SAFGHPYGFSPLPFHGRYNNHRSLGIQAHSISHKLSSYNGFGGHYGQINWSRLPFDQQPAIGKFPSMDNFHHHHHQMMMMAPSVNSRSNNIDSPSNTGRV LEGSPTLEQWHGDKGLLLSTSHHEEQQKLDLSLKL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 704/705 (99.9%)（アミノ酸配列で234/235 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G25 ATGGACGCTTCAATAGTTTCCTCATCCACTGCTTTTCCATATCAAGATTCTCTAAACCAGAGCATCGAAGACGAAGAAAGAGACGTTCATAATTCTAGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G ATGGACGCTTCAATAGTTTCCTCATCCACTGCTTTTCCATATCAAGATTCTCTAAACCAGAGCATCGAAGACGAAGAAAGAGACGTTCATAATTCTAGTC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G25 ACGAACTCAATCTCATCGACTGCATAGACGACACAACGAGTATCGTTAACGAATCTACAACATCCACAGAACAAAAGCTTTTCTCATGCAACTATTGTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G ACGAACTCAATCTCATCGACTGCATAGACGACACAACGAGTATCGTTAACGAATCTACAACATCCACAGAACAAAAGCTTTTCTCATGCAACTATTGTCA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G25 AAGAACTTTCTATAGCTCACAAGCACTTGGTGGTCACCAAAACGCACACAAGAGAGAGAGAACGTTGGCGAAGAGAGGACAACGTATGGCAGCGTCAGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G AAGAACTTTCTATAGCTCACAAGCACTTGGTGGTCACCAAAACGCACACAAGAGAGAGAGAACGTTGGCGAAGAGAGGACAACGTATGGCAGCGTCAGCC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G25 TCAGCTTTTGGACATCCTTACGGTTTCTCTCCACTTCCTTTCCACGGACAGTACAACAACCATAGGTCTTTAGGGATCCAAGCGCATTCGATAAGCCACA
::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TCAGCTTTTGGACATCCTTACGGTTTCTCTCCACTTCCTTTCCACGGACGGTACAACAACCATAGGTCTTTAGGGATCCAAGCGCATTCGATAAGCCACA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G25 AGCTAAGTTCTTATAACGGGTTTGGTGGTCACTATGGTCAGATCAACTGGTCAAGACTTCCATTTGATCAACAACCAGCCATAGGTAAATTTCCCTCAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G AGCTAAGTTCTTATAACGGGTTTGGTGGTCACTATGGTCAGATCAACTGGTCAAGACTTCCATTTGATCAACAACCAGCCATAGGTAAATTTCCCTCAAT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G25 GGATAATTTTCATCATCATCATCATCAGATGATGATGATGGCTCCTTCAGTAAATTCACGGTCCAATAACATCGATAGCCCAAGCAACACAGGACGGGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G GGATAATTTTCATCATCATCATCATCAGATGATGATGATGGCTCCTTCAGTAAATTCACGGTCCAATAACATCGATAGCCCAAGCAACACAGGACGGGTT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT5G25 CTAGAAGGGTCACCGACTCTTGAACAATGGCACGGAGACAAAGGATTGTTGTTAAGTACAAGTCATCATGAAGAGCAGCAGAAACTTGACTTGTCCCTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G CTAGAAGGGTCACCGACTCTTGAACAATGGCACGGAGACAAAGGATTGTTGTTAAGTACAAGTCATCATGAAGAGCAGCAGAAACTTGACTTGTCCCTCA
610 620 630 640 650 660 670 680 690 700
AT5G25 AGCTT
:::::
RE_03G AGCTT
10 20 30 40 50 60 70 80 90 100
AT5G25 MDASIVSSSTAFPYQDSLNQSIEDEERDVHNSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G MDASIVSSSTAFPYQDSLNQSIEDEERDVHNSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G25 SAFGHPYGFSPLPFHGQYNNHRSLGIQAHSISHKLSSYNGFGGHYGQINWSRLPFDQQPAIGKFPSMDNFHHHHHQMMMMAPSVNSRSNNIDSPSNTGRV
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G SAFGHPYGFSPLPFHGRYNNHRSLGIQAHSISHKLSSYNGFGGHYGQINWSRLPFDQQPAIGKFPSMDNFHHHHHQMMMMAPSVNSRSNNIDSPSNTGRV
110 120 130 140 150 160 170 180 190 200
210 220 230
AT5G25 LEGSPTLEQWHGDKGLLLSTSHHEEQQKLDLSLKL
:::::::::::::::::::::::::::::::::::
RE_03G LEGSPTLEQWHGDKGLLLSTSHHEEQQKLDLSLKL
210 220 230
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