| Code name | RE_03G11 | |||
|---|---|---|---|---|
| Locus | AT5G39610 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ->RE_0654(0420_塩基配列100%一致) | |||
| sequence |
>RE_03G11_855bp ATGGATTACGAGGCATCAAGAATCGTCGAAATGGTAGAAGATGAAGAACATATAGATCTACCACCAGGATTCAGATTTCACCCTACTGATGAAGAACTCA TAACTCACTACCTCAAACCAAAGGTTTTCAACACTTTCTTCTCTGCTACTGCCATTGGTGAAGTTGATCTCAACAAGATTGAGCCTTGGGACTTACCATG GAAGGCTAAGATGGGAGAAAAAGAATGGTATTTCTTCTGTGTGAGAGACCGGAAATACCCGACCGGTTTAAGGACAAACCGGGCGACAGAAGCCGGTTAT TGGAAAGCCACAGGAAAAGACAAAGAGATATTCAAGGGAAAATCACTTGTGGGTATGAAGAAAACTTTGGTTTTCTATAAAGGAAGAGCTCCTAAAGGAG TTAAAACCAATTGGGTTATGCATGAATATCGTTTAGAAGGCAAATATTGTATTGAAAATCTTCCCCAAACAGCTAAGAACGAATGGGTTATATGTCGTGT TTTCCAAAAACGTGCCGATGGTACAAAGGTTCCAATGTCAATGCTTGATCCACACATTAACCGAATGGAACCAGCCGGTTTACCTTCGTTAATGGATTGT TCTCAACGAGACTCCTTCACCGGTCCGTCGTCTCACGTGACCTGCTTCTCCGACCAAGAAACCGAAGACAAAAGACTTGTCCACGAGTCCAAAGACGGTT TTGGTTCTCTGTTTTACTCGGATCCTCTGTTTTTACAAGACAATTATTCGCTAATGAAGCTGTTGCTTGACGGTCAAGAAACTCAATTCTCCGGCAAACC TTTCGACGGTCGTGATTCGTCCGGTACAGAAGAATTGGATTGCGTTTGGAATTTC >RE_03G11_translated MDYEASRIVEMVEDEEHIDLPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGY WKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLEGKYCIENLPQTAKNEWVICRVFQKRADGTKVPMSMLDPHINRMEPAGLPSLMDC SQRDSFTGPSSHVTCFSDQETEDKRLVHESKDGFGSLFYSDPLFLQDNYSLMKLLLDGQETQFSGKPFDGRDSSGTEELDCVWNF |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 854/855 (99.9%)（アミノ酸配列で284/285 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G39 ATGGATTACGAGGCATCAAGAATCGTCGAAATGGTAGAAGATGAAGAACATATAGATCTACCACCAGGATTCAGATTTCACCCTACTGATGAAGAACTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G ATGGATTACGAGGCATCAAGAATCGTCGAAATGGTAGAAGATGAAGAACATATAGATCTACCACCAGGATTCAGATTTCACCCTACTGATGAAGAACTCA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G39 TAACTCACTACCTCAAACCAAAGGTTTTCAACACTTTCTTCTCTGCTACTGCCATTGGTGAAGTTGATCTCAACAAGATTGAGCCTTGGGACTTACCATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TAACTCACTACCTCAAACCAAAGGTTTTCAACACTTTCTTCTCTGCTACTGCCATTGGTGAAGTTGATCTCAACAAGATTGAGCCTTGGGACTTACCATG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G39 GAAGGCTAAGATGGGAGAAAAAGAATGGTATTTCTTCTGTGTGAGAGACCGGAAATACCCGACCGGTTTAAGGACAAACCGGGCGACAGAAGCCGGTTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G GAAGGCTAAGATGGGAGAAAAAGAATGGTATTTCTTCTGTGTGAGAGACCGGAAATACCCGACCGGTTTAAGGACAAACCGGGCGACAGAAGCCGGTTAT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G39 TGGAAAGCCACAGGAAAAGACAAAGAGATATTCAAGGGAAAATCACTTGTGGGTATGAAGAAAACTTTGGTTTTCTATAAAGGAAGAGCTCCTAAAGGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TGGAAAGCCACAGGAAAAGACAAAGAGATATTCAAGGGAAAATCACTTGTGGGTATGAAGAAAACTTTGGTTTTCTATAAAGGAAGAGCTCCTAAAGGAG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G39 TTAAAACCAATTGGGTTATGCATGAATATCGTTTAGAAGGCAAATATTGTATTGAAAATCTTCCCCAAACAGCTAAGAACGAATGGGTTATATGTCGTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TTAAAACCAATTGGGTTATGCATGAATATCGTTTAGAAGGCAAATATTGTATTGAAAATCTTCCCCAAACAGCTAAGAACGAATGGGTTATATGTCGTGT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G39 TTTCCAAAAACGTGCCGATGGTACAAAGGTTCCAATGTCAATGCTTGATCCACACATTAACCGAATGGAACCAGCCGGTTTACCTTCGTTAATGGATTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TTTCCAAAAACGTGCCGATGGTACAAAGGTTCCAATGTCAATGCTTGATCCACACATTAACCGAATGGAACCAGCCGGTTTACCTTCGTTAATGGATTGT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT5G39 TCTCAACGAGACTCCTTCACCGGTTCGTCGTCTCACGTGACCTGCTTCTCCGACCAAGAAACCGAAGACAAAAGACTTGTCCACGAGTCCAAAGACGGTT
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TCTCAACGAGACTCCTTCACCGGTCCGTCGTCTCACGTGACCTGCTTCTCCGACCAAGAAACCGAAGACAAAAGACTTGTCCACGAGTCCAAAGACGGTT
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT5G39 TTGGTTCTCTGTTTTACTCGGATCCTCTGTTTTTACAAGACAATTATTCGCTAATGAAGCTGTTGCTTGACGGTCAAGAAACTCAATTCTCCGGCAAACC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TTGGTTCTCTGTTTTACTCGGATCCTCTGTTTTTACAAGACAATTATTCGCTAATGAAGCTGTTGCTTGACGGTCAAGAAACTCAATTCTCCGGCAAACC
710 720 730 740 750 760 770 780 790 800
810 820 830 840 850
AT5G39 TTTCGACGGTCGTGATTCGTCCGGTACAGAAGAATTGGATTGCGTTTGGAATTTC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G TTTCGACGGTCGTGATTCGTCCGGTACAGAAGAATTGGATTGCGTTTGGAATTTC
810 820 830 840 850
10 20 30 40 50 60 70 80 90 100
AT5G39 MDYEASRIVEMVEDEEHIDLPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G MDYEASRIVEMVEDEEHIDLPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGY
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G39 WKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLEGKYCIENLPQTAKNEWVICRVFQKRADGTKVPMSMLDPHINRMEPAGLPSLMDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G WKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLEGKYCIENLPQTAKNEWVICRVFQKRADGTKVPMSMLDPHINRMEPAGLPSLMDC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280
AT5G39 SQRDSFTGSSSHVTCFSDQETEDKRLVHESKDGFGSLFYSDPLFLQDNYSLMKLLLDGQETQFSGKPFDGRDSSGTEELDCVWNF
:::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G SQRDSFTGPSSHVTCFSDQETEDKRLVHESKDGFGSLFYSDPLFLQDNYSLMKLLLDGQETQFSGKPFDGRDSSGTEELDCVWNF
210 220 230 240 250 260 270 280
|
|||