Code name | RE_03G12 | |||
---|---|---|---|---|
Locus | AT1G49480 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
comment | <-RE_0794 | |||
sequence |
>RE_03G12_678bp ATGCAAATGGATTCCGCACAGAATCAGTTCAACAAACGTGCTCGATTGTTTGAAGATCCTGAACTCAAAGATGCTAAGGTCATTTATCCATCGAACCCTG AATCTACTGAACCAGTGAATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAAGAAACGCCCAAGGTACTTAAGAA GAGAGGAAGGGAGAAGAAGAATCCTAATCCCGAGGAAGTAAACTCTTCAACTCCCGGTGGAGATGACTCAGAGAACCGCTCAAAGTTCTACGAGAGTGCT TCTGCTAGAAAGAGAACTGTAACTGCAGAGGAAAGAGAGAGAGCCGTCAATGCAGCCAAAACATTCGAACCAACAAATCCTTACTTTAGAGTTGTTCTGC GACCATCATATCTATACAGAGGTTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAATACCTAAGTGGGATATCTGGTTTCATCAAGCTCCAGCTCGG TGAGAAACAATGGCCAGTGAGGTGCCTCTACAAAGCAGGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAAGGA GATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCGTTCTCGAAGTCACCGCCTTTCGTGTCAATGAGTATGTG >RE_03G12_translated MQMDSAQNQFNKRARLFEDPELKDAKVIYPSNPESTEPVNKGYGGSTAIQSFFKESKAEETPKVLKKRGREKKNPNPEEVNSSTPGGDDSENRSKFYESA SARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCLYKAGRAKFSQGWYEFTLENNIGEG DVCVFELLRTRDFVLEVTAFRVNEYV |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 677/678 (99.9%)(アミノ酸配列で225/226 (99.6%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G49 ATGCAAATGGATTCCGCACAGAATCAGTTCAACAAACGTGCTCGATTGTTTGAAGATCCTGAACTCAAAGATGCTAAGGTCATTTATCCATCGAACCCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G ATGCAAATGGATTCCGCACAGAATCAGTTCAACAAACGTGCTCGATTGTTTGAAGATCCTGAACTCAAAGATGCTAAGGTCATTTATCCATCGAACCCTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G49 AATCTACTGAACCAGTGAATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAAGAAACGCCCAAGGTACTTAAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G AATCTACTGAACCAGTGAATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAAGAAACGCCCAAGGTACTTAAGAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G49 GAGAGGAAGGAAGAAGAAGAATCCTAATCCCGAGGAAGTAAACTCTTCAACTCCCGGTGGAGATGACTCAGAGAACCGCTCAAAGTTCTACGAGAGTGCT :::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G GAGAGGAAGGGAGAAGAAGAATCCTAATCCCGAGGAAGTAAACTCTTCAACTCCCGGTGGAGATGACTCAGAGAACCGCTCAAAGTTCTACGAGAGTGCT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G49 TCTGCTAGAAAGAGAACTGTAACTGCAGAGGAAAGAGAGAGAGCCGTCAATGCAGCCAAAACATTCGAACCAACAAATCCTTACTTTAGAGTTGTTCTGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G TCTGCTAGAAAGAGAACTGTAACTGCAGAGGAAAGAGAGAGAGCCGTCAATGCAGCCAAAACATTCGAACCAACAAATCCTTACTTTAGAGTTGTTCTGC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G49 GACCATCATATCTATACAGAGGTTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAATACCTAAGTGGGATATCTGGTTTCATCAAGCTCCAGCTCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G GACCATCATATCTATACAGAGGTTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAATACCTAAGTGGGATATCTGGTTTCATCAAGCTCCAGCTCGG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G49 TGAGAAACAATGGCCAGTGAGGTGCCTCTACAAAGCAGGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAAGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G TGAGAAACAATGGCCAGTGAGGTGCCTCTACAAAGCAGGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAAGGA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 AT1G49 GATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCGTTCTCGAAGTCACCGCCTTTCGTGTCAATGAGTATGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G GATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCGTTCTCGAAGTCACCGCCTTTCGTGTCAATGAGTATGTG 610 620 630 640 650 660 670 10 20 30 40 50 60 70 80 90 100 AT1G49 MQMDSAQNQFNKRARLFEDPELKDAKVIYPSNPESTEPVNKGYGGSTAIQSFFKESKAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: RE_03G MQMDSAQNQFNKRARLFEDPELKDAKVIYPSNPESTEPVNKGYGGSTAIQSFFKESKAEETPKVLKKRGREKKNPNPEEVNSSTPGGDDSENRSKFYESA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G49 SARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCLYKAGRAKFSQGWYEFTLENNIGEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G SARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCLYKAGRAKFSQGWYEFTLENNIGEG 110 120 130 140 150 160 170 180 190 200 210 220 AT1G49 DVCVFELLRTRDFVLEVTAFRVNEYV :::::::::::::::::::::::::: RE_03G DVCVFELLRTRDFVLEVTAFRVNEYV 210 220 |