◆◆◆RE_03H01 detail◆◆◆

Code name	RE_03H01
Locus	AT1G54160
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment
sequence	>RE_03H01_924bp ATGCAAGTGTTTCAAAGGAAAGAAGATTCATCTTGGGGAAACTCAATGCCTACAACAAATTCAAATATTCAAGGATCTGAATCTTTCAGCTTGACTGAGG ATATGATAATGTCTACAACACAATTACCCGCGATGAAACATTCGGGTTTGCAGCTGCAAAATCAAGATTCAACCTCATCACAATCTACTGAAGAAGAATC AGGCGGCGGTGAAGTTGCAAGCTTTGGAGAATATAAGCGTTATGGATGCAGCATTGTTAATAACAATCTCTCAGGTTACATCGAAAACTTGGGAAAGCCT ATTGAAAATTATACTAAGTCAATTACTACCTCGTCGATGGTGTCTCAAGACTCTGTGTTTCCTGCTCCTACTTCTGGTCAAATATCTTGGTCTCTTCAAT GTGCTGAAACGTCACATTTCAATGGTTTCTTGGCTCCTGAATATGCATCAACACCAACGGCGCTGCCACATTTAGAGATGATGGGTTTGGTTTCTTCAAG AGTGCCATTGCCTCATCACATTCAAGAGAATGAACCAATATTTGTCAATGCGAAACAGTATCATGCGATTCTCCGTCGCAGGAAGCACCGTGCTAAACTC GAAGCTCAGAACAAACTCATCAAATGCCGTAAACCGTACCTTCATGAGTCTCGCCATCTTCATGCTTTAAAGAGAGCTAGAGGCTCCGGTGGACGTTTCC TCAATACAAAGAAGCTTCAAGAATCATCAAACTCACTGTGTTCTTCTCAAATGGCAAATGGACAAAATTTCTCTATGAGCCCTCACGGTGGTGGAAGCGG AATCGGGTCTAGTTCGATCTCACCGAGCTCCAATTCAAACTGTATCAACATGTTCCAAAACCCGCAGTTCAGATTCTCAGGTTATCCGTCAACACACCAT GCCTCAGCTCTCATGTCAGGGACT >RE_03H01_translated MQVFQRKEDSSWGNSMPTTNSNIQGSESFSLTEDMIMSTTQLPAMKHSGLQLQNQDSTSSQSTEEESGGGEVASFGEYKRYGCSIVNNNLSGYIENLGKP IENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCAETSHFNGFLAPEYASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKL EAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGSSSISPSSNSNCINMFQNPQFRFSGYPSTHH ASALMSGT
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 923/924 (99.9%)（アミノ酸配列で307/308 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G54 ATGCAAGTGTTTCAAAGGAAAGAAGATTCATCTTGGGGAAACTCAATGCCTACAACAAATTCAAATATTCAAGGATCTGAATCTTTCAGCTTGACTAAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: RE_03H ATGCAAGTGTTTCAAAGGAAAGAAGATTCATCTTGGGGAAACTCAATGCCTACAACAAATTCAAATATTCAAGGATCTGAATCTTTCAGCTTGACTGAGG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G54 ATATGATAATGTCTACAACACAATTACCCGCGATGAAACATTCGGGTTTGCAGCTGCAAAATCAAGATTCAACCTCATCACAATCTACTGAAGAAGAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H ATATGATAATGTCTACAACACAATTACCCGCGATGAAACATTCGGGTTTGCAGCTGCAAAATCAAGATTCAACCTCATCACAATCTACTGAAGAAGAATC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G54 AGGCGGCGGTGAAGTTGCAAGCTTTGGAGAATATAAGCGTTATGGATGCAGCATTGTTAATAACAATCTCTCAGGTTACATCGAAAACTTGGGAAAGCCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H AGGCGGCGGTGAAGTTGCAAGCTTTGGAGAATATAAGCGTTATGGATGCAGCATTGTTAATAACAATCTCTCAGGTTACATCGAAAACTTGGGAAAGCCT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G54 ATTGAAAATTATACTAAGTCAATTACTACCTCGTCGATGGTGTCTCAAGACTCTGTGTTTCCTGCTCCTACTTCTGGTCAAATATCTTGGTCTCTTCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H ATTGAAAATTATACTAAGTCAATTACTACCTCGTCGATGGTGTCTCAAGACTCTGTGTTTCCTGCTCCTACTTCTGGTCAAATATCTTGGTCTCTTCAAT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G54 GTGCTGAAACGTCACATTTCAATGGTTTCTTGGCTCCTGAATATGCATCAACACCAACGGCGCTGCCACATTTAGAGATGATGGGTTTGGTTTCTTCAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H GTGCTGAAACGTCACATTTCAATGGTTTCTTGGCTCCTGAATATGCATCAACACCAACGGCGCTGCCACATTTAGAGATGATGGGTTTGGTTTCTTCAAG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G54 AGTGCCATTGCCTCATCACATTCAAGAGAATGAACCAATATTTGTCAATGCGAAACAGTATCATGCGATTCTCCGTCGCAGGAAGCACCGTGCTAAACTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H AGTGCCATTGCCTCATCACATTCAAGAGAATGAACCAATATTTGTCAATGCGAAACAGTATCATGCGATTCTCCGTCGCAGGAAGCACCGTGCTAAACTC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G54 GAAGCTCAGAACAAACTCATCAAATGCCGTAAACCGTACCTTCATGAGTCTCGCCATCTTCATGCTTTAAAGAGAGCTAGAGGCTCCGGTGGACGTTTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H GAAGCTCAGAACAAACTCATCAAATGCCGTAAACCGTACCTTCATGAGTCTCGCCATCTTCATGCTTTAAAGAGAGCTAGAGGCTCCGGTGGACGTTTCC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G54 TCAATACAAAGAAGCTTCAAGAATCATCAAACTCACTGTGTTCTTCTCAAATGGCAAATGGACAAAATTTCTCTATGAGCCCTCACGGTGGTGGAAGCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H TCAATACAAAGAAGCTTCAAGAATCATCAAACTCACTGTGTTCTTCTCAAATGGCAAATGGACAAAATTTCTCTATGAGCCCTCACGGTGGTGGAAGCGG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G54 AATCGGGTCTAGTTCGATCTCACCGAGCTCCAATTCAAACTGTATCAACATGTTCCAAAACCCGCAGTTCAGATTCTCAGGTTATCCGTCAACACACCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H AATCGGGTCTAGTTCGATCTCACCGAGCTCCAATTCAAACTGTATCAACATGTTCCAAAACCCGCAGTTCAGATTCTCAGGTTATCCGTCAACACACCAT 810 820 830 840 850 860 870 880 890 900 910 920 AT1G54 GCCTCAGCTCTCATGTCAGGGACT :::::::::::::::::::::::: RE_03H GCCTCAGCTCTCATGTCAGGGACT 910 920 10 20 30 40 50 60 70 80 90 100 AT1G54 MQVFQRKEDSSWGNSMPTTNSNIQGSESFSLTKDMIMSTTQLPAMKHSGLQLQNQDSTSSQSTEEESGGGEVASFGEYKRYGCSIVNNNLSGYIENLGKP ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H MQVFQRKEDSSWGNSMPTTNSNIQGSESFSLTEDMIMSTTQLPAMKHSGLQLQNQDSTSSQSTEEESGGGEVASFGEYKRYGCSIVNNNLSGYIENLGKP 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G54 IENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCAETSHFNGFLAPEYASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H IENYTKSITTSSMVSQDSVFPAPTSGQISWSLQCAETSHFNGFLAPEYASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKL 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G54 EAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGSSSISPSSNSNCINMFQNPQFRFSGYPSTHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03H EAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGSSSISPSSNSNCINMFQNPQFRFSGYPSTHH 210 220 230 240 250 260 270 280 290 300 AT1G54 ASALMSGT :::::::: RE_03H ASALMSGT

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