| Code name | RE_03H03 | |||
|---|---|---|---|---|
| Locus | AT5G23280 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ||||
| sequence |
>RE_03H03_750bp ATGTCTATTAACAACAACAACAACAACAACAACAATAACAACGATGGTCTTATGATCTCATCAAACGGAGCTTTAATCGAACAACAACCATCAGTCGTTG TGAAGAAACCACCGGCGAAAGATCGACATAGCAAAGTCGATGGAAGAGGGAGAAGAATCCGTATGCCGATTATATGTGCTGCTCGTGTTTTTCAGCTAAC GAGAGAGCTTGGTCATAAGTCAGATGGCCGAACAATTGAATGGTTACTTCGTCAAGCAGAGCCTTCTATTATAGCTGCAACAGGAACTGGTACAACTCCA GCGAGTTTCTCAACTGCTTCTGTCTCTATCCGTGGAGCCACCAATTCTACTTCTTTAGATCATAAACCCACTTCTTTACTTGGTGGTACGTCACCGTTTA TACTTGGGAAACGTGTTAGAGCTGATGAGGATAGTAATAATAGTCATAATCATAGTTCTGTTGGTAAAGATGAGACCTTTACGACAACACCAGCTGGGTT TTGGGCTGTTCCGGCGAGGCCGGATTTTGGACAAGTTTGGAGTTTTGCTGGAGCTCCACAAGAGATGTTTTTACAACAACAACATCATCATCAGCAACCA TTGTTTGTTCATCAGCAACAGCAACAACAAGCTGCAATGGGTGAAGCTTCTGCTGCTAGAGTTGGGAATTATCTTCCGGGTCATCTTAATTTGCTTGCTT CTTTATCCGGTGGATCTCCCGGGTCGGATCGAAGAGAGGAAGATCCACGT >RE_03H03_translated MSINNNNNNNNNNNDGLMISSNGALIEQQPSVVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGRTIEWLLRQAEPSIIAATGTGTTP ASFSTASVSIRGATNSTSLDHKPTSLLGGTSPFILGKRVRADEDSNNSHNHSSVGKDETFTTTPAGFWAVPARPDFGQVWSFAGAPQEMFLQQQHHHQQP LFVHQQQQQQAAMGEASAARVGNYLPGHLNLLASLSGGSPGSDRREEDPR |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 749/750 (99.9%)（アミノ酸配列で249/250 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G23 ATGTCTATTAACAACAACAACAACAACAACAACAATAACAACGATGGTCTTATGATCTCATCAAACGGAGCTTTAATCGAACAACAACCATCAGTCGTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H ATGTCTATTAACAACAACAACAACAACAACAACAATAACAACGATGGTCTTATGATCTCATCAAACGGAGCTTTAATCGAACAACAACCATCAGTCGTTG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G23 TGAAGAAACCACCGGCGAAAGATCGACATAGCAAAGTCGATGGAAGAGGGAGAAGAATCCGTATGCCGATTATATGTGCTGCTCGTGTTTTTCAGCTAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H TGAAGAAACCACCGGCGAAAGATCGACATAGCAAAGTCGATGGAAGAGGGAGAAGAATCCGTATGCCGATTATATGTGCTGCTCGTGTTTTTCAGCTAAC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G23 GAGAGAGCTTGGTCATAAGTCAGATGGCCAAACAATTGAATGGTTACTTCGTCAAGCAGAGCCTTCTATTATAGCTGCAACAGGAACTGGTACAACTCCA
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GAGAGAGCTTGGTCATAAGTCAGATGGCCGAACAATTGAATGGTTACTTCGTCAAGCAGAGCCTTCTATTATAGCTGCAACAGGAACTGGTACAACTCCA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G23 GCGAGTTTCTCAACTGCTTCTGTCTCTATCCGTGGAGCCACCAATTCTACTTCTTTAGATCATAAACCCACTTCTTTACTTGGTGGTACGTCACCGTTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GCGAGTTTCTCAACTGCTTCTGTCTCTATCCGTGGAGCCACCAATTCTACTTCTTTAGATCATAAACCCACTTCTTTACTTGGTGGTACGTCACCGTTTA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G23 TACTTGGGAAACGTGTTAGAGCTGATGAGGATAGTAATAATAGTCATAATCATAGTTCTGTTGGTAAAGATGAGACCTTTACGACAACACCAGCTGGGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H TACTTGGGAAACGTGTTAGAGCTGATGAGGATAGTAATAATAGTCATAATCATAGTTCTGTTGGTAAAGATGAGACCTTTACGACAACACCAGCTGGGTT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G23 TTGGGCTGTTCCGGCGAGGCCGGATTTTGGACAAGTTTGGAGTTTTGCTGGAGCTCCACAAGAGATGTTTTTACAACAACAACATCATCATCAGCAACCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H TTGGGCTGTTCCGGCGAGGCCGGATTTTGGACAAGTTTGGAGTTTTGCTGGAGCTCCACAAGAGATGTTTTTACAACAACAACATCATCATCAGCAACCA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT5G23 TTGTTTGTTCATCAGCAACAGCAACAACAAGCTGCAATGGGTGAAGCTTCTGCTGCTAGAGTTGGGAATTATCTTCCGGGTCATCTTAATTTGCTTGCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H TTGTTTGTTCATCAGCAACAGCAACAACAAGCTGCAATGGGTGAAGCTTCTGCTGCTAGAGTTGGGAATTATCTTCCGGGTCATCTTAATTTGCTTGCTT
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750
AT5G23 CTTTATCCGGTGGATCTCCCGGGTCGGATCGAAGAGAGGAAGATCCACGT
::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H CTTTATCCGGTGGATCTCCCGGGTCGGATCGAAGAGAGGAAGATCCACGT
710 720 730 740 750
10 20 30 40 50 60 70 80 90 100
AT5G23 MSINNNNNNNNNNNDGLMISSNGALIEQQPSVVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
RE_03H MSINNNNNNNNNNNDGLMISSNGALIEQQPSVVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGRTIEWLLRQAEPSIIAATGTGTTP
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G23 ASFSTASVSIRGATNSTSLDHKPTSLLGGTSPFILGKRVRADEDSNNSHNHSSVGKDETFTTTPAGFWAVPARPDFGQVWSFAGAPQEMFLQQQHHHQQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H ASFSTASVSIRGATNSTSLDHKPTSLLGGTSPFILGKRVRADEDSNNSHNHSSVGKDETFTTTPAGFWAVPARPDFGQVWSFAGAPQEMFLQQQHHHQQP
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250
AT5G23 LFVHQQQQQQAAMGEASAARVGNYLPGHLNLLASLSGGSPGSDRREEDPR
::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H LFVHQQQQQQAAMGEASAARVGNYLPGHLNLLASLSGGSPGSDRREEDPR
210 220 230 240 250
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