| Code name | RE_03H06 | |||
|---|---|---|---|---|
| Locus | AT4G37540 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ||||
| sequence |
>RE_03H06_720bp ATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGTGAAACATGCATCCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCC ACGCCACCGTCTTCGTCGCTAAATTCTTTGGTCGTGCTGGTCTCATGTCTTTCATCTCCTCCGTACCTGAACTCCAACGTCCTGCTTTGTTTCAGTCGTT GTTGTTTGAAGCGTGTGGGAGAACGGTGAATCCGGTTAACGGAGCGGTTGGTATGTTGTGGACCAGGAACTGGCACGTATGCCAAGCGGCGGTTGAGACT GTTCTTCGCGGCGGAACTTTACGACCGATATCAGAACTTCTTGAATCTCCGTCGTTGATGATCTCCTGTGATGAGTCTTCAGAGATTTGGCATCAAGACG TTTCAAGAAACCAAACCCACCATTGTCGCTTCTCCACCTCCAGATCCACGACGGAGATGAAAGACTCTCTGGTTAACCGAAAACGATTGAAGTCCGATTC GGATCTTGATCTCCAAGTGAACCACGGTTTAACCCTAACCGCTCCGGCTGTACCGGTTCCTTTTCTTCCTCCGTCGTCGTTTTGTAAGGTGGTTAAGGGT GATCGTCCGGGAAGTCCATCGGAGGAATCTGTAACGACGTCGTGTTGGGAAAATGGGATGAGAGGAGATAATAAACAAAAAAGAAACAAAGGAGAGAAAA AGTTATTGAACCTTTTTGTT >RE_03H06_translated MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVET VLRGGTLRPISELLESPSLMISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKG DRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 719/720 (99.9%)（アミノ酸配列で239/240 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G37 ATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGTGAAACATGCATCCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H ATGAGTTGCAATGGATGTAGAGTTCTTCGAAAAGGTTGCAGTGAAACATGCATCCTTCGTCCTTGCCTTCAATGGATCGAATCCGCCGAGTCACAAGGCC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G37 ACGCCACCGTCTTCGTCGCTAAATTCTTTGGTCGTGCTGGTCTCATGTCTTTCATCTCCTCCGTACCTGAACTCCAACGTCCTGCTTTGTTTCAGTCGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H ACGCCACCGTCTTCGTCGCTAAATTCTTTGGTCGTGCTGGTCTCATGTCTTTCATCTCCTCCGTACCTGAACTCCAACGTCCTGCTTTGTTTCAGTCGTT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G37 GTTGTTTGAAGCGTGTGGGAGAACGGTGAATCCGGTTAACGGAGCGGTTGGTATGTTGTGGACCAGGAACTGGCACGTATGCCAAGCGGCGGTTGAGACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GTTGTTTGAAGCGTGTGGGAGAACGGTGAATCCGGTTAACGGAGCGGTTGGTATGTTGTGGACCAGGAACTGGCACGTATGCCAAGCGGCGGTTGAGACT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G37 GTTCTTCGCGGCGGAACTTTACGACCGATATCAGATCTTCTTGAATCTCCGTCGTTGATGATCTCCTGTGATGAGTCTTCAGAGATTTGGCATCAAGACG
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GTTCTTCGCGGCGGAACTTTACGACCGATATCAGAACTTCTTGAATCTCCGTCGTTGATGATCTCCTGTGATGAGTCTTCAGAGATTTGGCATCAAGACG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G37 TTTCAAGAAACCAAACCCACCATTGTCGCTTCTCCACCTCCAGATCCACGACGGAGATGAAAGACTCTCTGGTTAACCGAAAACGATTGAAGTCCGATTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H TTTCAAGAAACCAAACCCACCATTGTCGCTTCTCCACCTCCAGATCCACGACGGAGATGAAAGACTCTCTGGTTAACCGAAAACGATTGAAGTCCGATTC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G37 GGATCTTGATCTCCAAGTGAACCACGGTTTAACCCTAACCGCTCCGGCTGTACCGGTTCCTTTTCTTCCTCCGTCGTCGTTTTGTAAGGTGGTTAAGGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GGATCTTGATCTCCAAGTGAACCACGGTTTAACCCTAACCGCTCCGGCTGTACCGGTTCCTTTTCTTCCTCCGTCGTCGTTTTGTAAGGTGGTTAAGGGT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT4G37 GATCGTCCGGGAAGTCCATCGGAGGAATCTGTAACGACGTCGTGTTGGGAAAATGGGATGAGAGGAGATAATAAACAAAAAAGAAACAAAGGAGAGAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GATCGTCCGGGAAGTCCATCGGAGGAATCTGTAACGACGTCGTGTTGGGAAAATGGGATGAGAGGAGATAATAAACAAAAAAGAAACAAAGGAGAGAAAA
610 620 630 640 650 660 670 680 690 700
710 720
AT4G37 AGTTATTGAACCTTTTTGTT
::::::::::::::::::::
RE_03H AGTTATTGAACCTTTTTGTT
710 720
10 20 30 40 50 60 70 80 90 100
AT4G37 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVET
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G37 VLRGGTLRPISDLLESPSLMISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKG
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H VLRGGTLRPISELLESPSLMISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKG
110 120 130 140 150 160 170 180 190 200
210 220 230 240
AT4G37 DRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV
::::::::::::::::::::::::::::::::::::::::
RE_03H DRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV
210 220 230 240
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