| Code name | RE_03H07 | |||
|---|---|---|---|---|
| Locus | AT1G06040 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ||||
| sequence |
>RE_03H07_744bp ATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCCGGCGACGGTGATTTGTTGCGCCGACGAAGCTGCTCTCTGTCCTCAATGCTACATCGAGATTCACG CCGCTAACAAACTCGCTAGCAAGCACCAACGTCTTCATCTTAATTCCCTCTCCACCAAATTCCCTCGTTGCGATATCTGCCAAGAGAAGGCAGCTTTCAT TTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTGCGATGAATCCATCCACGTGGCTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCACT GGGATCAAAGTAGCTCTGACCTCAACTATATGTAGTAAAGAAATTGAGAAGAATCAACCTGAGCCTTCCAACAACCAACAGAAGGCTAATCAGATTCCTG CTAAATCCACAAGCCAGCAGCAACAACAACCTTCTTCTGCTACTCCACTTCCCTGGGCTGTTGACGATTTCTTTCACTTCTCTGATATTGAATCCACCGA CAAGAAAGGACAGCTTGATCTTGGGGCAGGGGAGTTGGATTGGTTTTCAGACATGGGATTCTTCGGTGATCAGATTAATGACAAGGCTCTTCCTGCAGCT GAAGTTCCTGAGCTTTCTGTTTCGCATTTAGGTCATGTTCATTCATACAAACCTATGAAGTCAAATGTTTCACACAAGAAGCCGAGGTTTGAGACCAGAT ATGATGATGATGATGAGGAACACTTCATTGTCCCTGATCTTGGC >RE_03H07_translated MKIQCDVCEKAPATVICCADEAALCPQCYIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLAT GIKVALTSTICSKEIEKNQPEPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDKKGQLDLGAGELDWFSDMGFFGDQINDKALPAA EVPELSVSHLGHVHSYKPMKSNVSHKKPRFETRYDDDDEEHFIVPDLG |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 743/744 (99.9%)（アミノ酸配列で247/248 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G06 ATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCCGGCGACGGTGATTTGTTGCGCCGACGAAGCTGCTCTCTGTCCTCAATGCGACATCGAGATTCACG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
RE_03H ATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCCGGCGACGGTGATTTGTTGCGCCGACGAAGCTGCTCTCTGTCCTCAATGCTACATCGAGATTCACG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G06 CCGCTAACAAACTCGCTAGCAAGCACCAACGTCTTCATCTTAATTCCCTCTCCACCAAATTCCCTCGTTGCGATATCTGCCAAGAGAAGGCAGCTTTCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H CCGCTAACAAACTCGCTAGCAAGCACCAACGTCTTCATCTTAATTCCCTCTCCACCAAATTCCCTCGTTGCGATATCTGCCAAGAGAAGGCAGCTTTCAT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G06 TTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTGCGATGAATCCATCCACGTGGCTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H TTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTGCGATGAATCCATCCACGTGGCTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCACT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G06 GGGATCAAAGTAGCTCTGACCTCAACTATATGTAGTAAAGAAATTGAGAAGAATCAACCTGAGCCTTCCAACAACCAACAGAAGGCTAATCAGATTCCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GGGATCAAAGTAGCTCTGACCTCAACTATATGTAGTAAAGAAATTGAGAAGAATCAACCTGAGCCTTCCAACAACCAACAGAAGGCTAATCAGATTCCTG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G06 CTAAATCCACAAGCCAGCAGCAACAACAACCTTCTTCTGCTACTCCACTTCCCTGGGCTGTTGACGATTTCTTTCACTTCTCTGATATTGAATCCACCGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H CTAAATCCACAAGCCAGCAGCAACAACAACCTTCTTCTGCTACTCCACTTCCCTGGGCTGTTGACGATTTCTTTCACTTCTCTGATATTGAATCCACCGA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G06 CAAGAAAGGACAGCTTGATCTTGGGGCAGGGGAGTTGGATTGGTTTTCAGACATGGGATTCTTCGGTGATCAGATTAATGACAAGGCTCTTCCTGCAGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H CAAGAAAGGACAGCTTGATCTTGGGGCAGGGGAGTTGGATTGGTTTTCAGACATGGGATTCTTCGGTGATCAGATTAATGACAAGGCTCTTCCTGCAGCT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT1G06 GAAGTTCCTGAGCTTTCTGTTTCGCATTTAGGTCATGTTCATTCATACAAACCTATGAAGTCAAATGTTTCACACAAGAAGCCGAGGTTTGAGACCAGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GAAGTTCCTGAGCTTTCTGTTTCGCATTTAGGTCATGTTCATTCATACAAACCTATGAAGTCAAATGTTTCACACAAGAAGCCGAGGTTTGAGACCAGAT
610 620 630 640 650 660 670 680 690 700
710 720 730 740
AT1G06 ATGATGATGATGATGAGGAACACTTCATTGTCCCTGATCTTGGC
::::::::::::::::::::::::::::::::::::::::::::
RE_03H ATGATGATGATGATGAGGAACACTTCATTGTCCCTGATCTTGGC
710 720 730 740
10 20 30 40 50 60 70 80 90 100
AT1G06 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLAT
:::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H MKIQCDVCEKAPATVICCADEAALCPQCYIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLAT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G06 GIKVALTSTICSKEIEKNQPEPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDKKGQLDLGAGELDWFSDMGFFGDQINDKALPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GIKVALTSTICSKEIEKNQPEPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDKKGQLDLGAGELDWFSDMGFFGDQINDKALPAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240
AT1G06 EVPELSVSHLGHVHSYKPMKSNVSHKKPRFETRYDDDDEEHFIVPDLG
::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H EVPELSVSHLGHVHSYKPMKSNVSHKKPRFETRYDDDDEEHFIVPDLG
210 220 230 240
|
|||