| Code name | RE_03H09 | |||
|---|---|---|---|---|
| Locus | AT4G27310 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ->RE_1099(0314_塩基配列100%一致/0420_塩基配列100%一致) | |||
| sequence |
>RE_03H09_669bp ATGGGGAAGAAGTGTGATTTATGTAACGGTGTTGCAAGAATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGATTGCGACGGTAAAGTTCACGGCG CTAATTTCTTGGTAGCTAAACACACGCGTTGTCTTCTCTGTAGCGCTTGTCAGTCTCTTACGCCGTGGAAAGCTACTGGGCTTCGTCTTGGCCCAACTTT CTCCGTCTGCGAGTCATGCGTCGCTCTTAAAAACGCCGGCGGTGGCCGTGGAAACAGAGTTTTATCGGAGAATCGTGGTCAGGAGGAGGTTAATAGTTTC GAGTCCGAAGAAGATCGGATTAGAGAAGATCACGGTGACGGTGACGACGCGGAGTCTTACGATGATGATGAGGAAGAAGATGAGGATGAAGAGTACAGCG ACGATGAGGATGAGGATGATGATGAGGATGGTGATGATGAGGAAGCGGAGAATCAAGTTGTGCCGTGGTCTGCGGCGGCGCAAGTTCCTCCGGTGATGAG TTCTTCATCTTCTGACGGAGGAAACGGAGGTTCAGTGACGAAGAGGACGAGGGCTAGAGAGAATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAGC TCTTCAGCTCAAGGGTCAAACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTTGTT >RE_03H09_translated MGKKCDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLTPWKATGLRLGPTFSVCESCVALKNAGGGRGNRVLSENRGQEEVNSF ESEEDRIREDHGDGDDAESYDDDEEEDEDEEYSDDEDEDDDEDGDDEEAENQVVPWSAAAQVPPVMSSSSSDGGNGGSVTKRTRARENSDLLCSDDEIGS SSAQGSNYSRPLKRSAFKSTVVV |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 668/669 (99.9%)（アミノ酸配列で222/223 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G27 ATGGGGAAGAAGTGTGATTTATGTAACGGTGTTGCAAGAATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGATTGCGACGGTAAAGTTCACGGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H ATGGGGAAGAAGTGTGATTTATGTAACGGTGTTGCAAGAATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGATTGCGACGGTAAAGTTCACGGCG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G27 CTAATTTCTTGGTAGCTAAACACACGCGTTGTCTTCTCTGTAGCGCTTGTCAGTCTCTTACGCCGTGGAAAGCTACTGGGCTTCGTCTTGGCCCAACTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H CTAATTTCTTGGTAGCTAAACACACGCGTTGTCTTCTCTGTAGCGCTTGTCAGTCTCTTACGCCGTGGAAAGCTACTGGGCTTCGTCTTGGCCCAACTTT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G27 CTCCGTCTGCGAGTCATGCGTCGCTCTTAAAAACGCCGGCGGTGGCCGTGGAAACAGAGTTTTATCGGAGAATCGTGGTCAGGAGGAGGTTAATAGTTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H CTCCGTCTGCGAGTCATGCGTCGCTCTTAAAAACGCCGGCGGTGGCCGTGGAAACAGAGTTTTATCGGAGAATCGTGGTCAGGAGGAGGTTAATAGTTTC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G27 GAGTCCGAAGAAGATCGGATTAGAGAAGATCACGGTGACGGTGACGACGCGGAGTCTTACGATGATGATGAGGAAGAAGATGAGGATGAAGAGTACAGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GAGTCCGAAGAAGATCGGATTAGAGAAGATCACGGTGACGGTGACGACGCGGAGTCTTACGATGATGATGAGGAAGAAGATGAGGATGAAGAGTACAGCG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G27 ACGATGAGGATGAGGATGATGATGAGGATGGTGATGATGAGGAAGCGGAGAATCAAGTTGTGCCGTGGTCTGCGGCGGCGCAAGTTCCTCCGGTGATGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H ACGATGAGGATGAGGATGATGATGAGGATGGTGATGATGAGGAAGCGGAGAATCAAGTTGTGCCGTGGTCTGCGGCGGCGCAAGTTCCTCCGGTGATGAG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G27 TTCTTCATCTTCTGACGGAGGAAGCGGAGGTTCAGTGACGAAGAGGACGAGGGCTAGAGAGAATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAGC
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H TTCTTCATCTTCTGACGGAGGAAACGGAGGTTCAGTGACGAAGAGGACGAGGGCTAGAGAGAATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAGC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660
AT4G27 TCTTCAGCTCAAGGGTCAAACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTTGTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H TCTTCAGCTCAAGGGTCAAACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTTGTT
610 620 630 640 650 660
10 20 30 40 50 60 70 80 90 100
AT4G27 MGKKCDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLTPWKATGLRLGPTFSVCESCVALKNAGGGRGNRVLSENRGQEEVNSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H MGKKCDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLTPWKATGLRLGPTFSVCESCVALKNAGGGRGNRVLSENRGQEEVNSF
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G27 ESEEDRIREDHGDGDDAESYDDDEEEDEDEEYSDDEDEDDDEDGDDEEAENQVVPWSAAAQVPPVMSSSSSDGGSGGSVTKRTRARENSDLLCSDDEIGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
RE_03H ESEEDRIREDHGDGDDAESYDDDEEEDEDEEYSDDEDEDDDEDGDDEEAENQVVPWSAAAQVPPVMSSSSSDGGNGGSVTKRTRARENSDLLCSDDEIGS
110 120 130 140 150 160 170 180 190 200
210 220
AT4G27 SSAQGSNYSRPLKRSAFKSTVVV
:::::::::::::::::::::::
RE_03H SSAQGSNYSRPLKRSAFKSTVVV
210 220
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