| Code name | RE_03H10 | |||
|---|---|---|---|---|
| Locus | AT3G54340 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ||||
| sequence |
>RE_03H10_696bp ATGGCGAGAGGGAAGATCCAGATCAAGAGGATAGAGAACCAGACAAACAGACAAGTGACGTATTCAAAGAGAAGAAATGGTTTATTCAAGGAAGCACATG AGCTCACGGTTTTGTGTGATGCTAGGGTTTCGATTATCATGTTCTCTAGCTCCAACAAGCTTCATGAGTATATCAGCCCTAACACCACAACGAAGGAGAT CGTAGATCTGTACCAAACTATTTCTGATGTCGATGTTTGGGCCACTCAATATGAGCGAATGCAAGAAACCAAGAGGAAACTGTTGGAGACAAATAGAAAT CTCCGGACTCAGATCAAGCAGAGGCTAGGTGAGTGTTTGGACGAGCTTGACATTCAGGAGCTGCGTCGTCTTGAGGATGAAATGGAAAACACTTTCAAAC TCGTTCGCGAGCGCAAGTTCAAATCTCTTGGGAATCAGATCGAGACCACCAAGAAAAAGAACAAAAGTCAACAAGACATACAAAAGAATCTCATACATGA GCTGGAACTAAGAGCTGAAGATCCTCACTATGGACTAGTAGACAATGGAGGAGATTACGACTCAGTTCTTGGATACCAAATCGAAGGGTCACGTGCTTAC GCTCTTCGTTTCCACCAGAACCATCACCACTATTACCCCAACCATGGCCTTCATGCACCCTCTGCCTCTGACATCATTACCTTCCATCTTCTTGAA >RE_03H10_translated MARGKIQIKRIENQTNRQVTYSKRRNGLFKEAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRN LRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDPHYGLVDNGGDYDSVLGYQIEGSRAY ALRFHQNHHHYYPNHGLHAPSASDIITFHLLE |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 695/696 (99.9%)（アミノ酸配列で231/232 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G54 ATGGCGAGAGGGAAGATCCAGATCAAGAGGATAGAGAACCAGACAAACAGACAAGTGACGTATTCAAAGAGAAGAAATGGTTTATTCAAGAAAGCACATG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
RE_03H ATGGCGAGAGGGAAGATCCAGATCAAGAGGATAGAGAACCAGACAAACAGACAAGTGACGTATTCAAAGAGAAGAAATGGTTTATTCAAGGAAGCACATG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G54 AGCTCACGGTTTTGTGTGATGCTAGGGTTTCGATTATCATGTTCTCTAGCTCCAACAAGCTTCATGAGTATATCAGCCCTAACACCACAACGAAGGAGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H AGCTCACGGTTTTGTGTGATGCTAGGGTTTCGATTATCATGTTCTCTAGCTCCAACAAGCTTCATGAGTATATCAGCCCTAACACCACAACGAAGGAGAT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G54 CGTAGATCTGTACCAAACTATTTCTGATGTCGATGTTTGGGCCACTCAATATGAGCGAATGCAAGAAACCAAGAGGAAACTGTTGGAGACAAATAGAAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H CGTAGATCTGTACCAAACTATTTCTGATGTCGATGTTTGGGCCACTCAATATGAGCGAATGCAAGAAACCAAGAGGAAACTGTTGGAGACAAATAGAAAT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G54 CTCCGGACTCAGATCAAGCAGAGGCTAGGTGAGTGTTTGGACGAGCTTGACATTCAGGAGCTGCGTCGTCTTGAGGATGAAATGGAAAACACTTTCAAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H CTCCGGACTCAGATCAAGCAGAGGCTAGGTGAGTGTTTGGACGAGCTTGACATTCAGGAGCTGCGTCGTCTTGAGGATGAAATGGAAAACACTTTCAAAC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G54 TCGTTCGCGAGCGCAAGTTCAAATCTCTTGGGAATCAGATCGAGACCACCAAGAAAAAGAACAAAAGTCAACAAGACATACAAAAGAATCTCATACATGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H TCGTTCGCGAGCGCAAGTTCAAATCTCTTGGGAATCAGATCGAGACCACCAAGAAAAAGAACAAAAGTCAACAAGACATACAAAAGAATCTCATACATGA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G54 GCTGGAACTAAGAGCTGAAGATCCTCACTATGGACTAGTAGACAATGGAGGAGATTACGACTCAGTTCTTGGATACCAAATCGAAGGGTCACGTGCTTAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GCTGGAACTAAGAGCTGAAGATCCTCACTATGGACTAGTAGACAATGGAGGAGATTACGACTCAGTTCTTGGATACCAAATCGAAGGGTCACGTGCTTAC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690
AT3G54 GCTCTTCGTTTCCACCAGAACCATCACCACTATTACCCCAACCATGGCCTTCATGCACCCTCTGCCTCTGACATCATTACCTTCCATCTTCTTGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H GCTCTTCGTTTCCACCAGAACCATCACCACTATTACCCCAACCATGGCCTTCATGCACCCTCTGCCTCTGACATCATTACCTTCCATCTTCTTGAA
610 620 630 640 650 660 670 680 690
10 20 30 40 50 60 70 80 90 100
AT3G54 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRN
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H MARGKIQIKRIENQTNRQVTYSKRRNGLFKEAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRN
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G54 LRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDPHYGLVDNGGDYDSVLGYQIEGSRAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03H LRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDPHYGLVDNGGDYDSVLGYQIEGSRAY
110 120 130 140 150 160 170 180 190 200
210 220 230
AT3G54 ALRFHQNHHHYYPNHGLHAPSASDIITFHLLE
::::::::::::::::::::::::::::::::
RE_03H ALRFHQNHHHYYPNHGLHAPSASDIITFHLLE
210 220 230
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