| Code name | RE_0403 | |||
|---|---|---|---|---|
| Locus | AT2G41940 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0420_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0403_771bp ATGGACGAAACCAACGGACGAAGAGAAACTCACGATTTCATGAACGTCAACGTTGAATCCTTCTCTCAGCTTCCTTTCATCCGCCGTACTCCTCCCAAAG AAAAAGCCGCCATTATTCGTCTCTTCGGCCAAGAGCTCGTCGGTGATAACTCCGACAACTTATCCGCAGAACCTTCTGATCATCAAACCACTACCAAGAA CGATGAGAGCTCTGAGAATATCAAGGACAAAGACAAAGAAAAAGATAAGGACAAAGACAAAGATAACAACAACAACAGGAGATTCGAGTGTCACTACTGC TTCAGAAACTTCCCAACTTCTCAAGCCCTAGGTGGACATCAAAACGCTCACAAACGTGAACGTCAACACGCCAAACGCGGTTCCATGACATCATACCTTC ATCATCATCAGCCTCATGACCCTCACCACATCTACGGCTTCCTCAACAACCACCACCACCGTCACTATCCGTCTTGGACGACGGAAGCTAGATCATACTA CGGCGGAGGGGGACATCAAACGCCGTCGTACTACTCAAGGAATACTCTTGCTCCTCCTTCTTCTAACCCACCGACAATCAACGGAAGTCCTTTAGGTTTG TGGCGTGTACCGCCTTCCACGTCAACAAATACTATTCAAGGCGTTTACTCATCTTCACCAGCTTCAGCGTTTAGGTCGCATGATCAAGAGACTAATAAGG AGCCTAATAACTGGCCGTACAGATTGATGAAACCCAATGTACAAGATCATGTGAGTCTCGATCTTCATCTC >RE_0403_translated MDETNGRRETHDFMNVNVESFSQLPFIRRTPPKEKAAIIRLFGQELVGDNSDNLSAEPSDHQTTTKNDESSENIKDKDKEKDKDKDKDNNNNRRFECHYC FRNFPTSQALGGHQNAHKRERQHAKRGSMTSYLHHHQPHDPHHIYGFLNNHHHRHYPSWTTEARSYYGGGGHQTPSYYSRNTLAPPSSNPPTINGSPLGL WRVPPSTSTNTIQGVYSSSPASAFRSHDQETNKEPNNWPYRLMKPNVQDHVSLDLHL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 769/771 (99.7%)（アミノ酸配列で256/257 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G41 ATGGACGAAACCAACGGACGAAGAGAAACTCACGATTTCATGAACGTCAACGTTGAATCCTTCTCTCAGCTTCCTTTCATCCGCCGTACTCCTCCCAAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 ATGGACGAAACCAACGGACGAAGAGAAACTCACGATTTCATGAACGTCAACGTTGAATCCTTCTCTCAGCTTCCTTTCATCCGCCGTACTCCTCCCAAAG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G41 AAAAAGCCGCCATTATTCGTCTCTTCGGCCAAGAGCTCGTCGGTGATAACTCCGACAACTTATCCGCAGAACCTTCTGATCATCAAACCACTACCAAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 AAAAAGCCGCCATTATTCGTCTCTTCGGCCAAGAGCTCGTCGGTGATAACTCCGACAACTTATCCGCAGAACCTTCTGATCATCAAACCACTACCAAGAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT2G41 CGATGAGAGCTCTGAGAATATCAAGGACAAAGACAAAGAAAAAGATAAGGACAAAGACAAAGATAACAACAACAACAGGAGATTCGAGTGTCACTACTGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 CGATGAGAGCTCTGAGAATATCAAGGACAAAGACAAAGAAAAAGATAAGGACAAAGACAAAGATAACAACAACAACAGGAGATTCGAGTGTCACTACTGC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT2G41 TTCAGAAACTTCCCAACTTCTCAAGCCCTAGGTGGACATCAAAACGCTCACAAACGTGAACGTCAACACGCCAAACGCGGTTCCATGACATCATACCTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 TTCAGAAACTTCCCAACTTCTCAAGCCCTAGGTGGACATCAAAACGCTCACAAACGTGAACGTCAACACGCCAAACGCGGTTCCATGACATCATACCTTC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT2G41 ATCATCATCAGCCTCATGACCCTCACCACATCTACGGCTTCCTCAACAACCACCACCACCGTCACTATCCGTCTTGGACGACGGAAGCTAGATCATACTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 ATCATCATCAGCCTCATGACCCTCACCACATCTACGGCTTCCTCAACAACCACCACCACCGTCACTATCCGTCTTGGACGACGGAAGCTAGATCATACTA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT2G41 CGGCGGAGGGGGACATCAAACGCCGTCGTACTACTCAAGGAATACTCTTGCTCCTCCTTCTTCTAACCCACCGACAATCAACGGAAGTCCTTTAGGTTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 CGGCGGAGGGGGACATCAAACGCCGTCGTACTACTCAAGGAATACTCTTGCTCCTCCTTCTTCTAACCCACCGACAATCAACGGAAGTCCTTTAGGTTTG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT2G41 TGGCGTGTACCGCCTTCCACGTCAACAAATACTATTCAAGGCGTTTACTCATCTTCACCAGCTTCAGCGTTTAGGTCGCATGAGCAAGAGACTAATAAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
RE_040 TGGCGTGTACCGCCTTCCACGTCAACAAATACTATTCAAGGCGTTTACTCATCTTCACCAGCTTCAGCGTTTAGGTCGCATGATCAAGAGACTAATAAGG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770
AT2G41 AGCCTAATAACTGGCCGTACAGATTGATGAAACCCAATGTGCAAGATCATGTGAGTCTCGATCTTCATCTC
:::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
RE_040 AGCCTAATAACTGGCCGTACAGATTGATGAAACCCAATGTACAAGATCATGTGAGTCTCGATCTTCATCTC
710 720 730 740 750 760 770
10 20 30 40 50 60 70 80 90 100
AT2G41 MDETNGRRETHDFMNVNVESFSQLPFIRRTPPKEKAAIIRLFGQELVGDNSDNLSAEPSDHQTTTKNDESSENIKDKDKEKDKDKDKDNNNNRRFECHYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 MDETNGRRETHDFMNVNVESFSQLPFIRRTPPKEKAAIIRLFGQELVGDNSDNLSAEPSDHQTTTKNDESSENIKDKDKEKDKDKDKDNNNNRRFECHYC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G41 FRNFPTSQALGGHQNAHKRERQHAKRGSMTSYLHHHQPHDPHHIYGFLNNHHHRHYPSWTTEARSYYGGGGHQTPSYYSRNTLAPPSSNPPTINGSPLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 FRNFPTSQALGGHQNAHKRERQHAKRGSMTSYLHHHQPHDPHHIYGFLNNHHHRHYPSWTTEARSYYGGGGHQTPSYYSRNTLAPPSSNPPTINGSPLGL
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250
AT2G41 WRVPPSTSTNTIQGVYSSSPASAFRSHEQETNKEPNNWPYRLMKPNVQDHVSLDLHL
:::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
RE_040 WRVPPSTSTNTIQGVYSSSPASAFRSHDQETNKEPNNWPYRLMKPNVQDHVSLDLHL
210 220 230 240 250
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