| Code name | RE_0408 | |||
|---|---|---|---|---|
| Locus | AT3G19580 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | (RE_03G05_x)->0420_アミノ酸配列100%一致 | |||
| sequence |
>RE_0408_819bp ATGGCCCTCGAAGCGATGAACACTCCAACTTCTTCTTTCACCAGAATCGAAACGAAAGAAGATTTGATGAACGACGCCGTTTTCATTGAGCCGTGGCTTA AACGCAAACGCTCCAAACGTCAGCGTTCTCACAGCCCTTCTTCGTCTTCTTCCTCACCGCCTCGATCTCGACCCAAATCCCAGAATCAAGATCTTACGGA AGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTAAAGATCAACCGTCGCAAACGCGATTTCATCAACAGTCGCAATCGTTAACGCCGCCGCCAGAA TCAAAGAACCTTCCGTACAAGTGTAACGTCTGTGAAAAAGCGTTTCCTTCCTATCAGGCTTTAGGCGGTCACAAAGCAAGTCACCGAATCAAACCACCAA CCGTAATCTCAACAACCGCCGATGATTCAACAGCTCCGACCATCTCTATCGTCGCCGGAGAAAAACATCCGATTGCTGCCTCCGGAAAGATCCACGAGTG TTCAATCTGTCATAAAGTGTTTCCGACGGGTCAAGCTTTAGGCGGTCACAAACGTTGTCACTACGAAGGCAACCTTGGCGGCGGAGGAGGAGGAGGAAGC AAATCAATCAGTCACAGTGGAAGCGTGTCGAGCACGGTATCGGAAGAAAGGAGCCACCGTGGATTCATCGATCTAAACCTACCGGCGTTACCTGAACTCA GCCTTCATCACAATCCAATCGTCGACGAAGAGATCTTGAGTCCGTTGACCGGTAAAAAACCGCTTTTGTTGACCGATCACGACCAAGTCATCAAGAAAGA AGATTTATCTTTAAAAATC >RE_0408_translated MALEAMNTPTSSFTRIETKEDLMNDAVFIEPWLKRKRSKRQRSHSPSSSSSSPPRSRPKSQNQDLTEEEYLALCLLMLAKDQPSQTRFHQQSQSLTPPPE SKNLPYKCNVCEKAFPSYQALGGHKASHRIKPPTVISTTADDSTAPTISIVAGEKHPIAASGKIHECSICHKVFPTGQALGGHKRCHYEGNLGGGGGGGS KSISHSGSVSSTVSEERSHRGFIDLNLPALPELSLHHNPIVDEEILSPLTGKKPLLLTDHDQVIKKEDLSLKI |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 817/819 (99.8%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G19 ATGGCCCTCGAAGCGATGAACACTCCAACTTCTTCTTTCACCAGAATCGAAACGAAAGAAGATTTGATGAACGACGCCGTTTTCATTGAGCCGTGGCTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 ATGGCCCTCGAAGCGATGAACACTCCAACTTCTTCTTTCACCAGAATCGAAACGAAAGAAGATTTGATGAACGACGCCGTTTTCATTGAGCCGTGGCTTA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G19 AACGCAAACGCTCCAAACGTCAGCGTTCTCACAGCCCTTCTTCGTCTTCTTCCTCACCGCCTCGATCTCGACCCAAATCCCAGAATCAAGATCTTACGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 AACGCAAACGCTCCAAACGTCAGCGTTCTCACAGCCCTTCTTCGTCTTCTTCCTCACCGCCTCGATCTCGACCCAAATCCCAGAATCAAGATCTTACGGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G19 AGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTAAAGATCAACCGTCGCAAACGCGATTTCATCAACAGTCGCAATCGTTAACGCCGCCGCCAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 AGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTAAAGATCAACCGTCGCAAACGCGATTTCATCAACAGTCGCAATCGTTAACGCCGCCGCCAGAA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G19 TCAAAGAACCTTCCGTACAAGTGTAACGTCTGTGAAAAAGCGTTTCCTTCCTATCAGGCTTTAGGCGGTCACAAAGCAAGTCACCGAATCAAACCACCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 TCAAAGAACCTTCCGTACAAGTGTAACGTCTGTGAAAAAGCGTTTCCTTCCTATCAGGCTTTAGGCGGTCACAAAGCAAGTCACCGAATCAAACCACCAA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G19 CCGTAATCTCAACAACCGCCGATGATTCAACAGCTCCGACCATCTCCATCGTCGCCGGAGAAAAACATCCGATTGCTGCCTCCGGAAAGATCCACGAGTG
:::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 CCGTAATCTCAACAACCGCCGATGATTCAACAGCTCCGACCATCTCTATCGTCGCCGGAGAAAAACATCCGATTGCTGCCTCCGGAAAGATCCACGAGTG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G19 TTCAATCTGTCATAAAGTGTTTCCGACGGGTCAAGCTTTAGGCGGTCACAAACGTTGTCACTACGAAGGCAACCTCGGCGGCGGAGGAGGAGGAGGAAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
RE_040 TTCAATCTGTCATAAAGTGTTTCCGACGGGTCAAGCTTTAGGCGGTCACAAACGTTGTCACTACGAAGGCAACCTTGGCGGCGGAGGAGGAGGAGGAAGC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G19 AAATCAATCAGTCACAGTGGAAGCGTGTCGAGCACGGTATCGGAAGAAAGGAGCCACCGTGGATTCATCGATCTAAACCTACCGGCGTTACCTGAACTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 AAATCAATCAGTCACAGTGGAAGCGTGTCGAGCACGGTATCGGAAGAAAGGAGCCACCGTGGATTCATCGATCTAAACCTACCGGCGTTACCTGAACTCA
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT3G19 GCCTTCATCACAATCCAATCGTCGACGAAGAGATCTTGAGTCCGTTGACCGGTAAAAAACCGCTTTTGTTGACCGATCACGACCAAGTCATCAAGAAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 GCCTTCATCACAATCCAATCGTCGACGAAGAGATCTTGAGTCCGTTGACCGGTAAAAAACCGCTTTTGTTGACCGATCACGACCAAGTCATCAAGAAAGA
710 720 730 740 750 760 770 780 790 800
810
AT3G19 AGATTTATCTTTAAAAATC
:::::::::::::::::::
RE_040 AGATTTATCTTTAAAAATC
810
10 20 30 40 50 60 70 80 90 100
AT3G19 MALEAMNTPTSSFTRIETKEDLMNDAVFIEPWLKRKRSKRQRSHSPSSSSSSPPRSRPKSQNQDLTEEEYLALCLLMLAKDQPSQTRFHQQSQSLTPPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 MALEAMNTPTSSFTRIETKEDLMNDAVFIEPWLKRKRSKRQRSHSPSSSSSSPPRSRPKSQNQDLTEEEYLALCLLMLAKDQPSQTRFHQQSQSLTPPPE
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G19 SKNLPYKCNVCEKAFPSYQALGGHKASHRIKPPTVISTTADDSTAPTISIVAGEKHPIAASGKIHECSICHKVFPTGQALGGHKRCHYEGNLGGGGGGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 SKNLPYKCNVCEKAFPSYQALGGHKASHRIKPPTVISTTADDSTAPTISIVAGEKHPIAASGKIHECSICHKVFPTGQALGGHKRCHYEGNLGGGGGGGS
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270
AT3G19 KSISHSGSVSSTVSEERSHRGFIDLNLPALPELSLHHNPIVDEEILSPLTGKKPLLLTDHDQVIKKEDLSLKI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_040 KSISHSGSVSSTVSEERSHRGFIDLNLPALPELSLHHNPIVDEEILSPLTGKKPLLLTDHDQVIKKEDLSLKI
210 220 230 240 250 260 270
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