| Code name | RE_0413 | |||
|---|---|---|---|---|
| Locus | AT3G58070 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.20%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0413_759bp ATGGACGAGGCTACCGGAGAAACAGAAACTCAAGATTTCATGAACGTCGAATCCTTCTCTCAGCTTCCTTTCATTCGCCGTCCTAAAGATAAGAACCCTA AACCCATTCGTGTCTTCGGAAAAGATTTCACCGGCAGAGATTTCTCTATTACTACCGGTCAAGAAGACTACACCGATCCTTACCAGACCAAAAACAAAGA AGAAGAAGAGGAAGAAGACCAAACCGGAGACAACAGTACGGACAATAATAGCATCAGCCACAACGGGAGATTCGAGTGTCACTATTGCTTTAGAAATTTT CCTACTTCACAAGCCCTAGGTGGACACCAAAACGCTCACAAACGCGAACGTCAGCTTGCCAAACGCGGTGTTTCCTCTTACTTTTATCATCCTGACAATA ACCCTTACAGTTACCGTCATTACCCGTCGTGGACCAATGGTCCGTTAACCGCGGCTAGGTCCTATGGAGGATTTTCTTCTGGTCCTAAGCCGTCGGGGTA TTATACACGACCCAGCTATGGGAGTCAGTTAGGACTATGGCGTCTACCGCCTCGCGTTCAAGGCGTTTATAACTCAAACGCAGCGTTTACTAGTAATGGC TCTTCTTCTTCTTCTAATTCGACTTTACCGTTGTTGACCCGTTCTCAAACTCAACTATCATCGCAAGTGGGTGGCTCCGCTGCTCAGAACAGAATGTCAT CGTACGGTTACGGATTGGGCCCTAACGTGCAAGATCATGTGAGTCTCGATCTTCATCTT >RE_0413_translated MDEATGETETQDFMNVESFSQLPFIRRPKDKNPKPIRVFGKDFTGRDFSITTGQEDYTDPYQTKNKEEEEEEDQTGDNSTDNNSISHNGRFECHYCFRNF PTSQALGGHQNAHKRERQLAKRGVSSYFYHPDNNPYSYRHYPSWTNGPLTAARSYGGFSSGPKPSGYYTRPSYGSQLGLWRLPPRVQGVYNSNAAFTSNG SSSSSNSTLPLLTRSQTQLSSQVGGSAAQNRMSSYGYGLGPNVQDHVSLDLHL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 757/759 (99.7%)（アミノ酸配列で251/253 (99.2%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G58 ATGGACGAGGCTACCGGAGAAACAGAAACTCAAGATTTCATGAACGTCGAATCCTTCTCTCAGCTTCCTTTCATTCGCCGTCCTAAAGATAAGAACCCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 ATGGACGAGGCTACCGGAGAAACAGAAACTCAAGATTTCATGAACGTCGAATCCTTCTCTCAGCTTCCTTTCATTCGCCGTCCTAAAGATAAGAACCCTA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G58 AACCCATTCGTGTCTTCGGAAAAGATTTCACCGGCAGAGATTTCTCTATTACTACCGGTCAAGAAGACTACACCGATCCTTACCAGACCAAAAACAAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 AACCCATTCGTGTCTTCGGAAAAGATTTCACCGGCAGAGATTTCTCTATTACTACCGGTCAAGAAGACTACACCGATCCTTACCAGACCAAAAACAAAGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G58 AGAAGAAGAGGAAGAAGACCAAACCGGAGACAACAGTACGGACAATAATAGCATCAGCCACAACAGGAGATTCGAGTGTCACTATTGCTTTAGAAATTTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
RE_041 AGAAGAAGAGGAAGAAGACCAAACCGGAGACAACAGTACGGACAATAATAGCATCAGCCACAACGGGAGATTCGAGTGTCACTATTGCTTTAGAAATTTT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G58 CCTACTTCACAAGCCCTAGGTGGACACCAAAACGCTCACAAACGCGAACGTCAGCTTGCCAAACGCGGTGTTTCCTCTTACTTTTATCATCCTGACAATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 CCTACTTCACAAGCCCTAGGTGGACACCAAAACGCTCACAAACGCGAACGTCAGCTTGCCAAACGCGGTGTTTCCTCTTACTTTTATCATCCTGACAATA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G58 ACCCTTACAGTTACCGTCATTACCCGTCGTGGACCAATGGTCCGTTAACCGCGGCTAGGTCCTATGGAGGATTTTCTTCTGGTCCTAAGCCGTCGGGGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 ACCCTTACAGTTACCGTCATTACCCGTCGTGGACCAATGGTCCGTTAACCGCGGCTAGGTCCTATGGAGGATTTTCTTCTGGTCCTAAGCCGTCGGGGTA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G58 TTATACACGACCCAGCTATGGGAGTCAGTTAGGACTATGGCGTCTACCGCCTCGCGTTCAAGGCGTTTATAACTCAAACGCAGCGTTTACTAGTAATGGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 TTATACACGACCCAGCTATGGGAGTCAGTTAGGACTATGGCGTCTACCGCCTCGCGTTCAAGGCGTTTATAACTCAAACGCAGCGTTTACTAGTAATGGC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G58 TCTTCTTCTTCTTCTAATTCGACTTTACCGTTGTTGACCCGTTCTCAAACTCAACTATCATCGCAAGTGGGTGGCTCCGCTGCTCAGAACAGAATGTCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 TCTTCTTCTTCTTCTAATTCGACTTTACCGTTGTTGACCCGTTCTCAAACTCAACTATCATCGCAAGTGGGTGGCTCCGCTGCTCAGAACAGAATGTCAT
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750
AT3G58 CGTACGGTTACGGATTGAGCCCTAACGTGCAAGATCATGTGAGTCTCGATCTTCATCTT
::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
RE_041 CGTACGGTTACGGATTGGGCCCTAACGTGCAAGATCATGTGAGTCTCGATCTTCATCTT
710 720 730 740 750
10 20 30 40 50 60 70 80 90 100
AT3G58 MDEATGETETQDFMNVESFSQLPFIRRPKDKNPKPIRVFGKDFTGRDFSITTGQEDYTDPYQTKNKEEEEEEDQTGDNSTDNNSISHNRRFECHYCFRNF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
RE_041 MDEATGETETQDFMNVESFSQLPFIRRPKDKNPKPIRVFGKDFTGRDFSITTGQEDYTDPYQTKNKEEEEEEDQTGDNSTDNNSISHNGRFECHYCFRNF
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G58 PTSQALGGHQNAHKRERQLAKRGVSSYFYHPDNNPYSYRHYPSWTNGPLTAARSYGGFSSGPKPSGYYTRPSYGSQLGLWRLPPRVQGVYNSNAAFTSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 PTSQALGGHQNAHKRERQLAKRGVSSYFYHPDNNPYSYRHYPSWTNGPLTAARSYGGFSSGPKPSGYYTRPSYGSQLGLWRLPPRVQGVYNSNAAFTSNG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250
AT3G58 SSSSSNSTLPLLTRSQTQLSSQVGGSAAQNRMSSYGYGLSPNVQDHVSLDLHL
::::::::::::::::::::::::::::::::::::::: :::::::::::::
RE_041 SSSSSNSTLPLLTRSQTQLSSQVGGSAAQNRMSSYGYGLGPNVQDHVSLDLHL
210 220 230 240 250
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