| Code name | RE_0418 | |||
|---|---|---|---|---|
| Locus | AT4G17810 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列97.10%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0418_594bp ATGTGGAACCCTAACAAAATTGAAGAATTGGAGGATGATGATGAATCTTGGGAAGTCAAAGCCTTTGAGCAAGACACTAAAGGCAACATCTCTGGTACCA CTTGGCCTCCAAGATCTTACACTTGCAATTTCTGCCGCCGTGAGTTCCGTTCTGCTCAAGCCTTAGGCGGTCACATGAATGTCCACCGCCGTGACCGCGC CTCATCTAGGGCTCATCAAGGTTCCACCGTTGCGGCTGCGGCTAGAAGCGGCCACGGGGGGATGTTACTCAATTCTTGTGCTCCGCCGTTGCCTACAACG ACACTTATAATACAATCCACGGCGAGTAACATTGAAGGTTTGTCCCATTTCTACCAACTGCAAAACCCTAGTGGCATTTTTGGTAATTCTGGTGACATGG TGAATCTTTATGGTACGACTTCGTTTCCTCCGAGCAACCTTCCGTTTTCAATGTTGAATTCTCCAGTAGAAGTTCCTCCTCGGCTTATTGAATATTCGAC AGGAGATGATGAGAGCATTGGCTCGATGAAAGAAGCGACAGGAACATCAGTGGATGAGCTTGATCTTGAACTTCGGCTAGGGCACCATCCACCG >RE_0418_translated MWNPNKIEELEDDDESWEVKAFEQDTKGNISGTTWPPRSYTCNFCRREFRSAQALGGHMNVHRRDRASSRAHQGSTVAAAARSGHGGMLLNSCAPPLPTT TLIIQSTASNIEGLSHFYQLQNPSGIFGNSGDMVNLYGTTSFPPSNLPFSMLNSPVEVPPRLIEYSTGDDESIGSMKEATGTSVDELDLELRLGHHPP |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 594/612 (97.1%)（アミノ酸配列で198/204 (97.1%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G17 ATGAACGGTGGTGCATGGATGTGGAACCCTAACAAAATTGAAGAATTGGAGGATGATGATGAATCTTGGGAAGTCAAAGCCTTTGAGCAAGACACTAAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 ------------------ATGTGGAACCCTAACAAAATTGAAGAATTGGAGGATGATGATGAATCTTGGGAAGTCAAAGCCTTTGAGCAAGACACTAAAG
10 20 30 40 50 60 70 80
110 120 130 140 150 160 170 180 190 200
AT4G17 GCAACATCTCTGGTACCACTTGGCCTCCAAGATCTTACACTTGCAATTTCTGCCGCCGTGAGTTCCGTTCTGCTCAAGCCTTAGGCGGTCACATGAATGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 GCAACATCTCTGGTACCACTTGGCCTCCAAGATCTTACACTTGCAATTTCTGCCGCCGTGAGTTCCGTTCTGCTCAAGCCTTAGGCGGTCACATGAATGT
90 100 110 120 130 140 150 160 170 180
210 220 230 240 250 260 270 280 290 300
AT4G17 CCACCGCCGTGACCGCGCCTCATCTAGGGCTCATCAAGGTTCCACCGTTGCGGCTGCGGCTAGAAGCGGCCACGGGGGGATGTTACTCAATTCTTGTGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 CCACCGCCGTGACCGCGCCTCATCTAGGGCTCATCAAGGTTCCACCGTTGCGGCTGCGGCTAGAAGCGGCCACGGGGGGATGTTACTCAATTCTTGTGCT
190 200 210 220 230 240 250 260 270 280
310 320 330 340 350 360 370 380 390 400
AT4G17 CCGCCGTTGCCTACAACGACACTTATAATACAATCCACGGCGAGTAACATTGAAGGTTTGTCCCATTTCTACCAACTGCAAAACCCTAGTGGCATTTTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 CCGCCGTTGCCTACAACGACACTTATAATACAATCCACGGCGAGTAACATTGAAGGTTTGTCCCATTTCTACCAACTGCAAAACCCTAGTGGCATTTTTG
290 300 310 320 330 340 350 360 370 380
410 420 430 440 450 460 470 480 490 500
AT4G17 GTAATTCTGGTGACATGGTGAATCTTTATGGTACGACTTCGTTTCCTCCGAGCAACCTTCCGTTTTCAATGTTGAATTCTCCAGTAGAAGTTCCTCCTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 GTAATTCTGGTGACATGGTGAATCTTTATGGTACGACTTCGTTTCCTCCGAGCAACCTTCCGTTTTCAATGTTGAATTCTCCAGTAGAAGTTCCTCCTCG
390 400 410 420 430 440 450 460 470 480
510 520 530 540 550 560 570 580 590 600
AT4G17 GCTTATTGAATATTCGACAGGAGATGATGAGAGCATTGGCTCGATGAAAGAAGCGACAGGAACATCAGTGGATGAGCTTGATCTTGAACTTCGGCTAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 GCTTATTGAATATTCGACAGGAGATGATGAGAGCATTGGCTCGATGAAAGAAGCGACAGGAACATCAGTGGATGAGCTTGATCTTGAACTTCGGCTAGGG
490 500 510 520 530 540 550 560 570 580
610
AT4G17 CACCATCCACCG
::::::::::::
RE_041 CACCATCCACCG
590
10 20 30 40 50 60 70 80 90 100
AT4G17 MNGGAWMWNPNKIEELEDDDESWEVKAFEQDTKGNISGTTWPPRSYTCNFCRREFRSAQALGGHMNVHRRDRASSRAHQGSTVAAAARSGHGGMLLNSCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 ------MWNPNKIEELEDDDESWEVKAFEQDTKGNISGTTWPPRSYTCNFCRREFRSAQALGGHMNVHRRDRASSRAHQGSTVAAAARSGHGGMLLNSCA
10 20 30 40 50 60 70 80 90
110 120 130 140 150 160 170 180 190 200
AT4G17 PPLPTTTLIIQSTASNIEGLSHFYQLQNPSGIFGNSGDMVNLYGTTSFPPSNLPFSMLNSPVEVPPRLIEYSTGDDESIGSMKEATGTSVDELDLELRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_041 PPLPTTTLIIQSTASNIEGLSHFYQLQNPSGIFGNSGDMVNLYGTTSFPPSNLPFSMLNSPVEVPPRLIEYSTGDDESIGSMKEATGTSVDELDLELRLG
100 110 120 130 140 150 160 170 180 190
AT4G17 HHPP
::::
RE_041 HHPP
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