◆◆◆RE_0419 detail◆◆◆

Code name	RE_0419
Locus	AT4G25610
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	(manual:0708_20080115_0419F/W3/W1/W2)
sequence	>RE_0419_1758bp ATGGAGCTTGTGAAACAAGATGGGAATGATTCTCTCGATATGCTTATCAGACGTGCGGTTGGAAAGGATCCGTTTCTTTCCTTCCCTAGACCTGAAAATA CTCCTGTCCAGCTTTTTCAACTTCTCCATACCTTAGAACGTCCAGGCTGGCCATTGCTGACCCCTTTGAAGATACAAATGCAGAAGTGTGAAAAGTGCAG TAGGGAGTTTTGCTCTCCTGTGAACTTTAGAAGACATAACCGCATGCATCGCCGTCAAAGAAAGCCGGAAAAGGATTTTGGCAAAGAGAGGGATGCGCTG GGAGCCTTTTGGAATAAGCTCTCTGCAACTGATGCAAAGGAGATTCTCTCAGTAAAGAGCATGATGCTTGAGGATATTCCTGGGGCATCAGTGGAGTCAG GATTAATGTCACTTATCGAAAAACCAGGCTATACTGCTCTGCCACAATATTATCTAAGAGCTGGTTCTGGCCTTTTGGATCTTCTCCAGGCTAGACCACC TAGACTTCCAATTTCTTCGCAGGAACTTTTTAGCATTCTTGATGATGCAAGTGAAAAAACTTTCCTGTCTAGCGAGGCTGCACCAATGCAAAAGTACATT TTTGACGGGGAAATAGGAAAAACTGTACTGGAGGCAAAAAATGTTGTTGCTTGCGCAAGCTTCCTTCTGGAACAGCGATTGATTAAAGCATGGCTTGCTG ACAAAGATGCTGAAGCTCTGAGGTGCCAAAATTTACTGGTTGAAGAGGAAGAAGCTGCTCGAAGAAGAAAAGCTGAGCTCTTGGAGAGGAAGAAGAGGAA GAAGCTAAGGCAGAAAGAGCAGAGAGAGAAGGACCAGAAAAAAGATGCTAAGGAAGACGAGAGCACCACATCAGAGGAACAACAATATCCAGCTGAGCCA TCAAGCCCTTTATCTGTAGCTTCTGATTCTGAGGCACAGACACCAGATTCCTTACCAATTGATGATTCTTCATCCCTCGAGGAACCTCAAGTTTTGGAAA CTAATAATGGAAGAAACAGTGAAACGCAAGTGCCAATGGTTGATGGCTTAGACAATGGCCAAAACATGGAAAGGCGAAGTGGCCGTAGGCAAATGCAAAG ATCACAACAGGGAATGCCGAATGGGTTCCATGCTGATCATGCACCAAACCTTGGAGGCATGCGAAAGAATGGAACCAACAGAGACGCAAGAGCCAATACT ACTAAAGTTTGGAGCCGAAAATCCGATAACCCCAAATTGATATCACAACATGCAGCAGTGACTCAGCAGGATCAGACAAAGAGCAGCGAATTTATAGTTG GCTCGTTGAGTGTATCAATCCGAAACAGTGGCGAACATAACCAAACCAAATGCAGTGAAGGGGAGAGAAGAACAAAGACTGTTGAGGTGAAACCCGCATC TGAGCAATCAACTGTAAAAATATGGAGACCAGTGAGCAGTCAGGGAAGAAAAACCTCAACAGTCAATGGAAACACAGACAAAGAAGATAAGAGATCAAAC CCAACTACACCCGAAGTGAAAAACGCTCATCACATAAGCTTGCAGTTTAACAACCACGAAGCAAAGGCGTTTCTTGCAAAGAGATGGAAAGAGGCAACCT CTGCAGAACACGTGACATTGGTTCTGTCTCAGGAAACCGACATCTCAGGCAACAACACTCACGAGTCCTCAAATGGTGTTATAACCGCAAGATCAAAGCT GAGGACGAAAGCCGAAAAGGGCACAAAGGTAAAGTATGTTCCAAAACAGAGGATTCCT >RE_0419_translated MELVKQDGNDSLDMLIRRAVGKDPFLSFPRPENTPVQLFQLLHTLERPGWPLLTPLKIQMQKCEKCSREFCSPVNFRRHNRMHRRQRKPEKDFGKERDAL GAFWNKLSATDAKEILSVKSMMLEDIPGASVESGLMSLIEKPGYTALPQYYLRAGSGLLDLLQARPPRLPISSQELFSILDDASEKTFLSSEAAPMQKYI FDGEIGKTVLEAKNVVACASFLLEQRLIKAWLADKDAEALRCQNLLVEEEEAARRRKAELLERKKRKKLRQKEQREKDQKKDAKEDESTTSEEQQYPAEP SSPLSVASDSEAQTPDSLPIDDSSSLEEPQVLETNNGRNSETQVPMVDGLDNGQNMERRSGRRQMQRSQQGMPNGFHADHAPNLGGMRKNGTNRDARANT TKVWSRKSDNPKLISQHAAVTQQDQTKSSEFIVGSLSVSIRNSGEHNQTKCSEGERRTKTVEVKPASEQSTVKIWRPVSSQGRKTSTVNGNTDKEDKRSN PTTPEVKNAHHISLQFNNHEAKAFLAKRWKEATSAEHVTLVLSQETDISGNNTHESSNGVITARSKLRTKAEKGTKVKYVPKQRIP
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1757/1758 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G25 ATGGAGCTTGTGAAACAAGATGGGAATGATTCTCTCGATATGCTTATCAGACGTGCGGTTGGAAAGGATCCGTTTCTTTCCTTCCCTAGACCTGAAAATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 ATGGAGCTTGTGAAACAAGATGGGAATGATTCTCTCGATATGCTTATCAGACGTGCGGTTGGAAAGGATCCGTTTCTTTCCTTCCCTAGACCTGAAAATA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G25 CTCCTGTCCAGCTTTTTCAACTTCTCCATACCTTAGAACGTCCAGGCTGGCCATTGCTGACCCCTTTGAAGATACAAATGCAGAAGTGTGAAAAGTGCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 CTCCTGTCCAGCTTTTTCAACTTCTCCATACCTTAGAACGTCCAGGCTGGCCATTGCTGACCCCTTTGAAGATACAAATGCAGAAGTGTGAAAAGTGCAG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G25 TAGGGAGTTTTGCTCTCCTGTGAACTTTAGAAGACATAACCGCATGCATCGCCGTCAAAGAAAGCCGGAAAAGGATTTTGGCAAAGAGAGGGATGCGCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 TAGGGAGTTTTGCTCTCCTGTGAACTTTAGAAGACATAACCGCATGCATCGCCGTCAAAGAAAGCCGGAAAAGGATTTTGGCAAAGAGAGGGATGCGCTG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G25 GGAGCCTTTTGGAATAAGCTCTCTGCAACTGATGCAAAGGAGATTCTCTCAGTAAAGAGCATGATGCTTGAGGATATTCCTGGGGCATCAGTGGAGTCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 GGAGCCTTTTGGAATAAGCTCTCTGCAACTGATGCAAAGGAGATTCTCTCAGTAAAGAGCATGATGCTTGAGGATATTCCTGGGGCATCAGTGGAGTCAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G25 GATTAATGTCACTTATCGAAAAACCAGGCTATACTGCTCTGCCACAATATTATCTAAGAGCTGGTTCTGGCCTTTTGGATCTTCTCCAGGCTAGACCACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 GATTAATGTCACTTATCGAAAAACCAGGCTATACTGCTCTGCCACAATATTATCTAAGAGCTGGTTCTGGCCTTTTGGATCTTCTCCAGGCTAGACCACC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G25 TAGACTTCCAATTTCTTCGCAGGAACTTTTTAGCATTCTTGATGATGCAAGTGAAAAAACTTTCCTGTCTAGCGAGGCTGCACCAATGCAAAAGTACATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 TAGACTTCCAATTTCTTCGCAGGAACTTTTTAGCATTCTTGATGATGCAAGTGAAAAAACTTTCCTGTCTAGCGAGGCTGCACCAATGCAAAAGTACATT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G25 TTTGACGGGGAAATAGGAAAAACTGTACTGGAGGCAAAAAATGTTGTTGCTTGCGCAAGCTTCCTTCTGGAACAGCGATTGATTAAAGCATGGCTTGCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 TTTGACGGGGAAATAGGAAAAACTGTACTGGAGGCAAAAAATGTTGTTGCTTGCGCAAGCTTCCTTCTGGAACAGCGATTGATTAAAGCATGGCTTGCTG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G25 ACAAAGATGCTGAAGCTCTGAGGTGCCAAAATTTACTGGTTGAAGAGGAAGAAGCTGCTCGAAGAAGAAAAGCTGAGCTCTTGGAGAGGAAGAAGAGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 ACAAAGATGCTGAAGCTCTGAGGTGCCAAAATTTACTGGTTGAAGAGGAAGAAGCTGCTCGAAGAAGAAAAGCTGAGCTCTTGGAGAGGAAGAAGAGGAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G25 GAAGCTAAGGCAGAAAGAGCAGAGAGAGAAGGACCAGAAAAAAGATGCTAAGGAAGACGAGAGCACCACATCAGAGGAACAACAATATCCAGCTGAGCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 GAAGCTAAGGCAGAAAGAGCAGAGAGAGAAGGACCAGAAAAAAGATGCTAAGGAAGACGAGAGCACCACATCAGAGGAACAACAATATCCAGCTGAGCCA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G25 TCAAGCCCTTTATCTGTAGCTTCTGATTCTGAGGCACAGACACCAGATTCCTTACCAATTGATGATTCTTCATCCCTCGAGGAACCTCAAGTTTTGGAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 TCAAGCCCTTTATCTGTAGCTTCTGATTCTGAGGCACAGACACCAGATTCCTTACCAATTGATGATTCTTCATCCCTCGAGGAACCTCAAGTTTTGGAAA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G25 CTAATAATGGAAGAAACAGTGAAACGCAAGTGCCAATGGTTGATGGCTTAGACAATGGCCAAAACATGGAAAGGCGAAGTGGCCGTAGGCAAATGCAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 CTAATAATGGAAGAAACAGTGAAACGCAAGTGCCAATGGTTGATGGCTTAGACAATGGCCAAAACATGGAAAGGCGAAGTGGCCGTAGGCAAATGCAAAG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G25 ATCACAACAGGGAATGCCGAATGGGTTCCATGCTGATCATGCACCAAACCTTGGAGGCATGCGAAAGAATGGAACCAACAGAGACGCAAGAGCCAATACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 ATCACAACAGGGAATGCCGAATGGGTTCCATGCTGATCATGCACCAAACCTTGGAGGCATGCGAAAGAATGGAACCAACAGAGACGCAAGAGCCAATACT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G25 ACTAAAGTTTGGAGCCGAAAATCCGATAACCCCAAATTGATATCACAACATGCAGCAGTGACTCAGCAGGATCAGACAAAGAGCAGCGAATTTATAGTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 ACTAAAGTTTGGAGCCGAAAATCCGATAACCCCAAATTGATATCACAACATGCAGCAGTGACTCAGCAGGATCAGACAAAGAGCAGCGAATTTATAGTTG 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT4G25 GATCGTTGAGTGTATCAATCCGAAACAGTGGCGAACATAACCAAACCAAATGCAGTGAAGGGGAGAGAAGAACAAAGACTGTTGAGGTGAAACCCGCATC : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 GCTCGTTGAGTGTATCAATCCGAAACAGTGGCGAACATAACCAAACCAAATGCAGTGAAGGGGAGAGAAGAACAAAGACTGTTGAGGTGAAACCCGCATC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT4G25 TGAGCAATCAACTGTAAAAATATGGAGACCAGTGAGCAGTCAGGGAAGAAAAACCTCAACAGTCAATGGAAACACAGACAAAGAAGATAAGAGATCAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 TGAGCAATCAACTGTAAAAATATGGAGACCAGTGAGCAGTCAGGGAAGAAAAACCTCAACAGTCAATGGAAACACAGACAAAGAAGATAAGAGATCAAAC 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT4G25 CCAACTACACCCGAAGTGAAAAACGCTCATCACATAAGCTTGCAGTTTAACAACCACGAAGCAAAGGCGTTTCTTGCAAAGAGATGGAAAGAGGCAACCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 CCAACTACACCCGAAGTGAAAAACGCTCATCACATAAGCTTGCAGTTTAACAACCACGAAGCAAAGGCGTTTCTTGCAAAGAGATGGAAAGAGGCAACCT 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT4G25 CTGCAGAACACGTGACATTGGTTCTGTCTCAGGAAACCGACATCTCAGGCAACAACACTCACGAGTCCTCAAATGGTGTTATAACCGCAAGATCAAAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 CTGCAGAACACGTGACATTGGTTCTGTCTCAGGAAACCGACATCTCAGGCAACAACACTCACGAGTCCTCAAATGGTGTTATAACCGCAAGATCAAAGCT 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 AT4G25 GAGGACGAAAGCCGAAAAGGGCACAAAGGTAAAGTATGTTCCAAAACAGAGGATTCCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 GAGGACGAAAGCCGAAAAGGGCACAAAGGTAAAGTATGTTCCAAAACAGAGGATTCCT 1710 1720 1730 1740 1750 10 20 30 40 50 60 70 80 90 100 AT4G25 MELVKQDGNDSLDMLIRRAVGKDPFLSFPRPENTPVQLFQLLHTLERPGWPLLTPLKIQMQKCEKCSREFCSPVNFRRHNRMHRRQRKPEKDFGKERDAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 MELVKQDGNDSLDMLIRRAVGKDPFLSFPRPENTPVQLFQLLHTLERPGWPLLTPLKIQMQKCEKCSREFCSPVNFRRHNRMHRRQRKPEKDFGKERDAL 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G25 GAFWNKLSATDAKEILSVKSMMLEDIPGASVESGLMSLIEKPGYTALPQYYLRAGSGLLDLLQARPPRLPISSQELFSILDDASEKTFLSSEAAPMQKYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 GAFWNKLSATDAKEILSVKSMMLEDIPGASVESGLMSLIEKPGYTALPQYYLRAGSGLLDLLQARPPRLPISSQELFSILDDASEKTFLSSEAAPMQKYI 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G25 FDGEIGKTVLEAKNVVACASFLLEQRLIKAWLADKDAEALRCQNLLVEEEEAARRRKAELLERKKRKKLRQKEQREKDQKKDAKEDESTTSEEQQYPAEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 FDGEIGKTVLEAKNVVACASFLLEQRLIKAWLADKDAEALRCQNLLVEEEEAARRRKAELLERKKRKKLRQKEQREKDQKKDAKEDESTTSEEQQYPAEP 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G25 SSPLSVASDSEAQTPDSLPIDDSSSLEEPQVLETNNGRNSETQVPMVDGLDNGQNMERRSGRRQMQRSQQGMPNGFHADHAPNLGGMRKNGTNRDARANT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 SSPLSVASDSEAQTPDSLPIDDSSSLEEPQVLETNNGRNSETQVPMVDGLDNGQNMERRSGRRQMQRSQQGMPNGFHADHAPNLGGMRKNGTNRDARANT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G25 TKVWSRKSDNPKLISQHAAVTQQDQTKSSEFIVGSLSVSIRNSGEHNQTKCSEGERRTKTVEVKPASEQSTVKIWRPVSSQGRKTSTVNGNTDKEDKRSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 TKVWSRKSDNPKLISQHAAVTQQDQTKSSEFIVGSLSVSIRNSGEHNQTKCSEGERRTKTVEVKPASEQSTVKIWRPVSSQGRKTSTVNGNTDKEDKRSN 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 AT4G25 PTTPEVKNAHHISLQFNNHEAKAFLAKRWKEATSAEHVTLVLSQETDISGNNTHESSNGVITARSKLRTKAEKGTKVKYVPKQRIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_041 PTTPEVKNAHHISLQFNNHEAKAFLAKRWKEATSAEHVTLVLSQETDISGNNTHESSNGVITARSKLRTKAEKGTKVKYVPKQRIP 510 520 530 540 550 560 570 580

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