◆◆◆RE_0422 detail◆◆◆

Code name	RE_0422
Locus	AT4G31420
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0420_アミノ酸配列70%以上一致
sequence	>RE_0422_1212bp ATGCCTGGTTTAACATGTAACGCGTGTAACATGGAGTTCAAGGACGAAGAAGAACGTAACCTTCATTACAAATCCGATTGGCACCGCTACAATCTCAAGC GCAAGGTGGCTGGAGTTCCTGGAGTTACAGAAGCCTTGTTTGAGGCTAGACAATCTGCTCTTGCTCAGGAGAAGAATAAATCAAATGAAGCACCTATGCT TTATACTTGTGCAATCTGTGCTAAAGGTTACAGGAGTTCCAAGGCTCATGAGCAGCATCTTCAGTCGCGTAGCCCTGTTTTGCGGGTTTCACAAGGGACA TCAATCAACGGAGAGGAGGATATAGCGATTATCAGGCAACTTCCTCGCCGTGTTCAACACAGGGGTTCCATTGATGATGATAGTGAAGATGAATGGGTGG AGGTTGATTCTGACGAGGAATTGGCTGCTGAAGAAGCCTCTGATTCTTTGTCTAAGTTGAATGTGAATGAGTCTGGATCTGCTGAAGATATGGATGATGA TGGTGATGCAGATAAGTATGAGCTGGATCCAACCTGCTGTTTGATGTGTGACAAAAAACATAAGACCTTAGAGAGCTGTATGCTTCACATGCATAAGCAT CATGGTTTCTTTATTCCCGATATTGAGTATCTCAAGGATCCTGAAGGGCTTCTCACTTACCTTGGTCTTAAGGTCAAGAGAGACTTCATGTGTCTGTACT GCAATGAGCTGTGCCGTCCATTCAGCAGCTTAGAAGCTGTAAGAAAACATATGGAAGCAAAGAGTCATTGCAAACTGCATTATGGTGATGGTGATGATGA AGAAGATGCTGAGCTAGAAGAGTTTTATGACTACAGCAGCAGCTATGTTGATGAAGCTGGAAAGCAAATTGTTGTATCTGGTGAAACAGACAATACTGTA GAACTCGTTGGTGGTTCTGAGCTCTTGATCACGGAGAAGTCCGAGAACACAACAACGTCTAAAACTCTCGGGTCCCGTGAATTCATGCGTTACTACAGAC AGAAGCCACGCCCAACTTCTCAAGACAGCAACCAGATAATTGCCTCTTTATCTTCAAGGTACAAGAGCCTGGGTCTGAAGACAGTACCGTCGAAAGAGGA GACTTTGAGGATGAAAGTGCGCAAGGAGATGAGCAAGAGAGGCGAGACAATGCGTACCAAGATCGGAGTGAAGAGTAATGTCATAAGAAACTTGCCCAAT AACGTCCCATAT >RE_0422_translated MPGLTCNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTEALFEARQSALAQEKNKSNEAPMLYTCAICAKGYRSSKAHEQHLQSRSPVLRVSQGT SINGEEDIAIIRQLPRRVQHRGSIDDDSEDEWVEVDSDEELAAEEASDSLSKLNVNESGSAEDMDDDGDADKYELDPTCCLMCDKKHKTLESCMLHMHKH HGFFIPDIEYLKDPEGLLTYLGLKVKRDFMCLYCNELCRPFSSLEAVRKHMEAKSHCKLHYGDGDDEEDAELEEFYDYSSSYVDEAGKQIVVSGETDNTV ELVGGSELLITEKSENTTTSKTLGSREFMRYYRQKPRPTSQDSNQIIASLSSRYKSLGLKTVPSKEETLRMKVRKEMSKRGETMRTKIGVKSNVIRNLPN NVPY
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1211/1212 (99.9%)（アミノ酸配列で403/404 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G31 ATGCCTGGTTTAACATGTAACGCGTGTAACATGGAGTTCAAGGACGAAGAAGAACGTAACCTTCATTACAAATCCGATTGGCACCGCTACAATCTCAAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 ATGCCTGGTTTAACATGTAACGCGTGTAACATGGAGTTCAAGGACGAAGAAGAACGTAACCTTCATTACAAATCCGATTGGCACCGCTACAATCTCAAGC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G31 GCAAGGTGGCTGGAGTTCCTGGAGTTACAGAAGCCTTGTTTGAGGCTAGACAATCTGCTCTTGCTCAGGAGAAGAATAAATCAAATGAAGCACCTATGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 GCAAGGTGGCTGGAGTTCCTGGAGTTACAGAAGCCTTGTTTGAGGCTAGACAATCTGCTCTTGCTCAGGAGAAGAATAAATCAAATGAAGCACCTATGCT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G31 TTATACTTGTGCAATCTGTGCTAAAGGTTACAGGAGTTCCAAGGCTCATGAGCAGCATCTTCAGTCGCGTAGCCATGTTTTGCGGGTTTCACAAGGGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: RE_042 TTATACTTGTGCAATCTGTGCTAAAGGTTACAGGAGTTCCAAGGCTCATGAGCAGCATCTTCAGTCGCGTAGCCCTGTTTTGCGGGTTTCACAAGGGACA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G31 TCAATCAACGGAGAGGAGGATATAGCGATTATCAGGCAACTTCCTCGCCGTGTTCAACACAGGGGTTCCATTGATGATGATAGTGAAGATGAATGGGTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 TCAATCAACGGAGAGGAGGATATAGCGATTATCAGGCAACTTCCTCGCCGTGTTCAACACAGGGGTTCCATTGATGATGATAGTGAAGATGAATGGGTGG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G31 AGGTTGATTCTGACGAGGAATTGGCTGCTGAAGAAGCCTCTGATTCTTTGTCTAAGTTGAATGTGAATGAGTCTGGATCTGCTGAAGATATGGATGATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 AGGTTGATTCTGACGAGGAATTGGCTGCTGAAGAAGCCTCTGATTCTTTGTCTAAGTTGAATGTGAATGAGTCTGGATCTGCTGAAGATATGGATGATGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G31 TGGTGATGCAGATAAGTATGAGCTGGATCCAACCTGCTGTTTGATGTGTGACAAAAAACATAAGACCTTAGAGAGCTGTATGCTTCACATGCATAAGCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 TGGTGATGCAGATAAGTATGAGCTGGATCCAACCTGCTGTTTGATGTGTGACAAAAAACATAAGACCTTAGAGAGCTGTATGCTTCACATGCATAAGCAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G31 CATGGTTTCTTTATTCCCGATATTGAGTATCTCAAGGATCCTGAAGGGCTTCTCACTTACCTTGGTCTTAAGGTCAAGAGAGACTTCATGTGTCTGTACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 CATGGTTTCTTTATTCCCGATATTGAGTATCTCAAGGATCCTGAAGGGCTTCTCACTTACCTTGGTCTTAAGGTCAAGAGAGACTTCATGTGTCTGTACT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G31 GCAATGAGCTGTGCCGTCCATTCAGCAGCTTAGAAGCTGTAAGAAAACATATGGAAGCAAAGAGTCATTGCAAACTGCATTATGGTGATGGTGATGATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 GCAATGAGCTGTGCCGTCCATTCAGCAGCTTAGAAGCTGTAAGAAAACATATGGAAGCAAAGAGTCATTGCAAACTGCATTATGGTGATGGTGATGATGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G31 AGAAGATGCTGAGCTAGAAGAGTTTTATGACTACAGCAGCAGCTATGTTGATGAAGCTGGAAAGCAAATTGTTGTATCTGGTGAAACAGACAATACTGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 AGAAGATGCTGAGCTAGAAGAGTTTTATGACTACAGCAGCAGCTATGTTGATGAAGCTGGAAAGCAAATTGTTGTATCTGGTGAAACAGACAATACTGTA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G31 GAACTCGTTGGTGGTTCTGAGCTCTTGATCACGGAGAAGTCCGAGAACACAACAACGTCTAAAACTCTCGGGTCCCGTGAATTCATGCGTTACTACAGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 GAACTCGTTGGTGGTTCTGAGCTCTTGATCACGGAGAAGTCCGAGAACACAACAACGTCTAAAACTCTCGGGTCCCGTGAATTCATGCGTTACTACAGAC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G31 AGAAGCCACGCCCAACTTCTCAAGACAGCAACCAGATAATTGCCTCTTTATCTTCAAGGTACAAGAGCCTGGGTCTGAAGACAGTACCGTCGAAAGAGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 AGAAGCCACGCCCAACTTCTCAAGACAGCAACCAGATAATTGCCTCTTTATCTTCAAGGTACAAGAGCCTGGGTCTGAAGACAGTACCGTCGAAAGAGGA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G31 GACTTTGAGGATGAAAGTGCGCAAGGAGATGAGCAAGAGAGGCGAGACAATGCGTACCAAGATCGGAGTGAAGAGTAATGTCATAAGAAACTTGCCCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 GACTTTGAGGATGAAAGTGCGCAAGGAGATGAGCAAGAGAGGCGAGACAATGCGTACCAAGATCGGAGTGAAGAGTAATGTCATAAGAAACTTGCCCAAT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 AT4G31 AACGTCCCATAT :::::::::::: RE_042 AACGTCCCATAT 1210 10 20 30 40 50 60 70 80 90 100 AT4G31 MPGLTCNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTEALFEARQSALAQEKNKSNEAPMLYTCAICAKGYRSSKAHEQHLQSRSHVLRVSQGT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: RE_042 MPGLTCNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTEALFEARQSALAQEKNKSNEAPMLYTCAICAKGYRSSKAHEQHLQSRSPVLRVSQGT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G31 SINGEEDIAIIRQLPRRVQHRGSIDDDSEDEWVEVDSDEELAAEEASDSLSKLNVNESGSAEDMDDDGDADKYELDPTCCLMCDKKHKTLESCMLHMHKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 SINGEEDIAIIRQLPRRVQHRGSIDDDSEDEWVEVDSDEELAAEEASDSLSKLNVNESGSAEDMDDDGDADKYELDPTCCLMCDKKHKTLESCMLHMHKH 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G31 HGFFIPDIEYLKDPEGLLTYLGLKVKRDFMCLYCNELCRPFSSLEAVRKHMEAKSHCKLHYGDGDDEEDAELEEFYDYSSSYVDEAGKQIVVSGETDNTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 HGFFIPDIEYLKDPEGLLTYLGLKVKRDFMCLYCNELCRPFSSLEAVRKHMEAKSHCKLHYGDGDDEEDAELEEFYDYSSSYVDEAGKQIVVSGETDNTV 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G31 ELVGGSELLITEKSENTTTSKTLGSREFMRYYRQKPRPTSQDSNQIIASLSSRYKSLGLKTVPSKEETLRMKVRKEMSKRGETMRTKIGVKSNVIRNLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_042 ELVGGSELLITEKSENTTTSKTLGSREFMRYYRQKPRPTSQDSNQIIASLSSRYKSLGLKTVPSKEETLRMKVRKEMSKRGETMRTKIGVKSNVIRNLPN 310 320 330 340 350 360 370 380 390 400 AT4G31 NVPY :::: RE_042 NVPY

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