◆◆◆RE_0439 detail◆◆◆

Code nameRE_0439
LocusAT5G54630
Forward primer
Reverse primer
Alignment with TAIR7CDSアミノ酸配列99.80%一致
comment0311_アミノ酸配列70%以上一致
sequence
>RE_0439_1416bp
ATGGAAGATTCAAGCAAAAAAAGCCAAAAGAAGAAGAAGAACAAAAGCAAGAACAACATCCCAACTGTTTGGTTCTCACTCAAGAAATCCCTCCACTGTA
AATCCGAACCATCTGATGTCCACGACCCAATATCCACCACTAAACAGCAACAACACCTCTCCACAATCTCCACCAAGAAAATCTCCGGCATATCATCCGG
CGGAGCCGCCGTATGCGGTGGTGGTTTATCAGGATGTTCAAGATCAATAGCAAATCTCAAAGACGTAATCCATGGAAGCAAAAGACATTTCGAGAAACCA
CCAATAAGTAGTCCTCGTTCTATTGGAAGCAATGAGTTTCTAAATCCTATAACTCATGAAGTTATTCTTAGTAACTCAACTTGTGAGCTTAAGATCACTG
GTGTCGGAGACATGGCTTCACCTGTCGGAGCAGCGGATTCCGGCGGAGGTGGCGGTGGAGGAAATGGTCGGTCTACGACTTATGTAGGGATGCTTAGACC
AGGAACACCGATGCATTATCTTAACCATTCAGCTTCTTACAGGAGCCAAACAAGAAAGGGTTCGTTTGCTTTGTCGGAGAGAGATCGAGGAGGAGGAGGA
GGAGGAGAAGGGTTAGGGTTTCATACAAACAGAAGGGTTTCATTGGAGATGAACAGAGAATCCACCATTAATGGAGGCAACAATTCCTCTGTTTCTTGTC
GTAAATGTGGTGAACAGTTCAATAAGCTTGAAGCTGCTGAAGCTCATCATCTCTCTAAACATGCCGTAACGGAGCTTGTAGAAGGAGATTCATCAAGAAA
AATAGTGGAGATAATCTGCAGAACAAGCTGGTTAAAGTCAGAGAACCAATGTGGAAGAATCGATAGAGTTTTAAAAGTACACAACATGCAGAAGACATTA
GCTAGATTCGAGGAATACAGAGAAACAGTTAAAATCAGAGCAAGCAAACTTCAGAAGAAGCATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGGT
TCCACGGAACCACCGTGGCTTGTGGTTTAGGTATAAACGGGTCAACAAGTGTTTGCACGGCGGAGAAATGTTGTGTCTGTCGGATTATACGAAACGGGTT
CTCGTCGAAACGGGAGAAGAATAATGGGGTTGGTGTTTTCACGGCGTCTACTAGTGGAAGAGCGTTCGAGTCGATTTTGGTTAACGGTGGAGATGAGAGT
GGAGATGTTGATCGGACGGTGAGGAAAGTGTTGATTGTGTGTAGGGTTATCGCCGGAAGAGTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGGT
TGATGAGTGGGTTTGATTCTTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAGCTTTATTTGCTTAATCCTAAAGCTTTGCTTCCTTGCTTTGT
GGTCATTTGCAAGCCC

>RE_0439_translated
MEDSSKKSQKKKKNKSKNNIPTVWFSLKKSLHCKSEPSDVHDPISTTKQQQHLSTISTKKISGISSGGAAVCGGGLSGCSRSIANLKDVIHGSKRHFEKP
PISSPRSIGSNEFLNPITHEVILSNSTCELKITGVGDMASPVGAADSGGGGGGGNGRSTTYVGMLRPGTPMHYLNHSASYRSQTRKGSFALSERDRGGGG
GGEGLGFHTNRRVSLEMNRESTINGGNNSSVSCRKCGEQFNKLEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIDRVLKVHNMQKTL
ARFEEYRETVKIRASKLQKKHPRCLADGNELLRFHGTTVACGLGINGSTSVCTAEKCCVCRIIRNGFSSKREKNNGVGVFTASTSGRAFESILVNGGDES
GDVDRTVRKVLIVCRVIAGRVHRPVENVEEMNGLMSGFDSLAGKVGLYTNVEELYLLNPKALLPCFVVICKP
Alignment CDS(TAIRver.9)_without_stop_codonとのalignment

1415/1416 (99.9%)(アミノ酸配列で471/472 (99.8%))一致しました。


               10        20        30        40        50        60        70        80        90       100
AT5G54 ATGGAAGATTCAAGCAAAAAAAGCCAAAAGAAGAAGAAGAACAAAAGCAAGAACAACATCCCAACTGTTTGGTTCTCACTCAAGAAATCCCTCCACTGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 ATGGAAGATTCAAGCAAAAAAAGCCAAAAGAAGAAGAAGAACAAAAGCAAGAACAACATCCCAACTGTTTGGTTCTCACTCAAGAAATCCCTCCACTGTA
               10        20        30        40        50        60        70        80        90       100

              110       120       130       140       150       160       170       180       190       200
AT5G54 AATCCGAACCATCTGATGTCCACGACCCAATATCCACCACTAAACAGCAACAACACCTCTCCACAATCTCCACCAAGAAAATCTCCGGCATATCATCCGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 AATCCGAACCATCTGATGTCCACGACCCAATATCCACCACTAAACAGCAACAACACCTCTCCACAATCTCCACCAAGAAAATCTCCGGCATATCATCCGG
              110       120       130       140       150       160       170       180       190       200

              210       220       230       240       250       260       270       280       290       300
AT5G54 CGGAGCCGCCGTATGCGGTGGTGGTTTATCAGGATGTTCAAGATCAATAGCAAATCTCAAAGACGTAATCCATGGAAGCAAAAGACATTTCGAGAAACCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 CGGAGCCGCCGTATGCGGTGGTGGTTTATCAGGATGTTCAAGATCAATAGCAAATCTCAAAGACGTAATCCATGGAAGCAAAAGACATTTCGAGAAACCA
              210       220       230       240       250       260       270       280       290       300

              310       320       330       340       350       360       370       380       390       400
AT5G54 CCAATAAGTAGTCCTCGTTCTATTGGAAGCAATGAGTTTCTAAATCCTATAACTCATGAAGTTATTCTTAGTAACTCAACTTGTGAGCTTAAGATCACTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 CCAATAAGTAGTCCTCGTTCTATTGGAAGCAATGAGTTTCTAAATCCTATAACTCATGAAGTTATTCTTAGTAACTCAACTTGTGAGCTTAAGATCACTG
              310       320       330       340       350       360       370       380       390       400

              410       420       430       440       450       460       470       480       490       500
AT5G54 GTGTCGGAGACATGGCTTCACCTGTCGGAGCAGCGGATTCCGGCGGAGGTGGCGGTGGAGGAAATGGTCGGTCTACGACTTATGTAGGGATGCTTAGACC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 GTGTCGGAGACATGGCTTCACCTGTCGGAGCAGCGGATTCCGGCGGAGGTGGCGGTGGAGGAAATGGTCGGTCTACGACTTATGTAGGGATGCTTAGACC
              410       420       430       440       450       460       470       480       490       500

              510       520       530       540       550       560       570       580       590       600
AT5G54 AGGAACACCGATGCATTATCTTAACCATTCAGCTTCTTACAGGAGCCAAACAAGAAAGGGTTCGTTTGCTTTGTCGGAGAGAGATCGAGGAGGAGGAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 AGGAACACCGATGCATTATCTTAACCATTCAGCTTCTTACAGGAGCCAAACAAGAAAGGGTTCGTTTGCTTTGTCGGAGAGAGATCGAGGAGGAGGAGGA
              510       520       530       540       550       560       570       580       590       600

              610       620       630       640       650       660       670       680       690       700
AT5G54 GGAGGAGAAGGGTTAGGGTTTCATACAAACAGAAGGGTTTCATTGGAGATGAACAGAGAATCCACCATTAATGGAGGCAACAATTCCTCTGTTTCTTGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 GGAGGAGAAGGGTTAGGGTTTCATACAAACAGAAGGGTTTCATTGGAGATGAACAGAGAATCCACCATTAATGGAGGCAACAATTCCTCTGTTTCTTGTC
              610       620       630       640       650       660       670       680       690       700

              710       720       730       740       750       760       770       780       790       800
AT5G54 ATAAATGTGGTGAACAGTTCAATAAGCTTGAAGCTGCTGAAGCTCATCATCTCTCTAAACATGCCGTAACGGAGCTTGTAGAAGGAGATTCATCAAGAAA
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 GTAAATGTGGTGAACAGTTCAATAAGCTTGAAGCTGCTGAAGCTCATCATCTCTCTAAACATGCCGTAACGGAGCTTGTAGAAGGAGATTCATCAAGAAA
              710       720       730       740       750       760       770       780       790       800

              810       820       830       840       850       860       870       880       890       900
AT5G54 AATAGTGGAGATAATCTGCAGAACAAGCTGGTTAAAGTCAGAGAACCAATGTGGAAGAATCGATAGAGTTTTAAAAGTACACAACATGCAGAAGACATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 AATAGTGGAGATAATCTGCAGAACAAGCTGGTTAAAGTCAGAGAACCAATGTGGAAGAATCGATAGAGTTTTAAAAGTACACAACATGCAGAAGACATTA
              810       820       830       840       850       860       870       880       890       900

              910       920       930       940       950       960       970       980       990      1000
AT5G54 GCTAGATTCGAGGAATACAGAGAAACAGTTAAAATCAGAGCAAGCAAACTTCAGAAGAAGCATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 GCTAGATTCGAGGAATACAGAGAAACAGTTAAAATCAGAGCAAGCAAACTTCAGAAGAAGCATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGGT
              910       920       930       940       950       960       970       980       990      1000

             1010      1020      1030      1040      1050      1060      1070      1080      1090      1100
AT5G54 TCCACGGAACCACCGTGGCTTGTGGTTTAGGTATAAACGGGTCAACAAGTGTTTGCACGGCGGAGAAATGTTGTGTCTGTCGGATTATACGAAACGGGTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 TCCACGGAACCACCGTGGCTTGTGGTTTAGGTATAAACGGGTCAACAAGTGTTTGCACGGCGGAGAAATGTTGTGTCTGTCGGATTATACGAAACGGGTT
             1010      1020      1030      1040      1050      1060      1070      1080      1090      1100

             1110      1120      1130      1140      1150      1160      1170      1180      1190      1200
AT5G54 CTCGTCGAAACGGGAGAAGAATAATGGGGTTGGTGTTTTCACGGCGTCTACTAGTGGAAGAGCGTTCGAGTCGATTTTGGTTAACGGTGGAGATGAGAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 CTCGTCGAAACGGGAGAAGAATAATGGGGTTGGTGTTTTCACGGCGTCTACTAGTGGAAGAGCGTTCGAGTCGATTTTGGTTAACGGTGGAGATGAGAGT
             1110      1120      1130      1140      1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260      1270      1280      1290      1300
AT5G54 GGAGATGTTGATCGGACGGTGAGGAAAGTGTTGATTGTGTGTAGGGTTATCGCCGGAAGAGTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 GGAGATGTTGATCGGACGGTGAGGAAAGTGTTGATTGTGTGTAGGGTTATCGCCGGAAGAGTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGGT
             1210      1220      1230      1240      1250      1260      1270      1280      1290      1300

             1310      1320      1330      1340      1350      1360      1370      1380      1390      1400
AT5G54 TGATGAGTGGGTTTGATTCTTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAGCTTTATTTGCTTAATCCTAAAGCTTTGCTTCCTTGCTTTGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 TGATGAGTGGGTTTGATTCTTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAGCTTTATTTGCTTAATCCTAAAGCTTTGCTTCCTTGCTTTGT
             1310      1320      1330      1340      1350      1360      1370      1380      1390      1400

             1410      
AT5G54 GGTCATTTGCAAGCCC
       ::::::::::::::::
RE_043 GGTCATTTGCAAGCCC
             1410      



               10        20        30        40        50        60        70        80        90       100
AT5G54 MEDSSKKSQKKKKNKSKNNIPTVWFSLKKSLHCKSEPSDVHDPISTTKQQQHLSTISTKKISGISSGGAAVCGGGLSGCSRSIANLKDVIHGSKRHFEKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 MEDSSKKSQKKKKNKSKNNIPTVWFSLKKSLHCKSEPSDVHDPISTTKQQQHLSTISTKKISGISSGGAAVCGGGLSGCSRSIANLKDVIHGSKRHFEKP
               10        20        30        40        50        60        70        80        90       100

              110       120       130       140       150       160       170       180       190       200
AT5G54 PISSPRSIGSNEFLNPITHEVILSNSTCELKITGVGDMASPVGAADSGGGGGGGNGRSTTYVGMLRPGTPMHYLNHSASYRSQTRKGSFALSERDRGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 PISSPRSIGSNEFLNPITHEVILSNSTCELKITGVGDMASPVGAADSGGGGGGGNGRSTTYVGMLRPGTPMHYLNHSASYRSQTRKGSFALSERDRGGGG
              110       120       130       140       150       160       170       180       190       200

              210       220       230       240       250       260       270       280       290       300
AT5G54 GGEGLGFHTNRRVSLEMNRESTINGGNNSSVSCHKCGEQFNKLEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIDRVLKVHNMQKTL
       ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 GGEGLGFHTNRRVSLEMNRESTINGGNNSSVSCRKCGEQFNKLEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIDRVLKVHNMQKTL
              210       220       230       240       250       260       270       280       290       300

              310       320       330       340       350       360       370       380       390       400
AT5G54 ARFEEYRETVKIRASKLQKKHPRCLADGNELLRFHGTTVACGLGINGSTSVCTAEKCCVCRIIRNGFSSKREKNNGVGVFTASTSGRAFESILVNGGDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 ARFEEYRETVKIRASKLQKKHPRCLADGNELLRFHGTTVACGLGINGSTSVCTAEKCCVCRIIRNGFSSKREKNNGVGVFTASTSGRAFESILVNGGDES
              310       320       330       340       350       360       370       380       390       400

              410       420       430       440       450       460       470  
AT5G54 GDVDRTVRKVLIVCRVIAGRVHRPVENVEEMNGLMSGFDSLAGKVGLYTNVEELYLLNPKALLPCFVVICKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_043 GDVDRTVRKVLIVCRVIAGRVHRPVENVEEMNGLMSGFDSLAGKVGLYTNVEELYLLNPKALLPCFVVICKP
              410       420       430       440       450       460       470  


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