Code name | RE_0455 | |||
---|---|---|---|---|
Locus | AT3G55980 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列99.80%一致 | |||
comment | 0422_アミノ酸配列70%以上一致 | |||
sequence |
>RE_0455_1740bp ATGTGCAGTGGACCAAAGAGCAATCTCTGCTCTTCAAGAACCTTAACAGAAATCGAATCAAGGCAAAAGGAAGAAGAAACAATGCTTCTCCTCGAATTCG CTGCTTGTGATGATCTTGACTCGTTCAAGAGAGAGGTTGAAGAGAAAGGGCTTGATTTGGATGAGTCAGGGTTATGGTATTGCAGACGTGTCGGTTCTAA GAAGATGGGTCTTGAAGAAAGAACACCTTTAATGGTTGCAGCTATGTATGGAAGCATAAAGGTTTTGACTTTCATCGTTTCCACTGGAAAATCTGATGTG AACAGAGCTTGTGGTGAAGAGAGAGTTACTCCGCTTCACTGTGCTGTTGCTGGCTGTTCTGTGAATATGATTGAAGTCATCAATGTCTTGCTTGATGCTT CTGCTTTGGTTAACTCTGTTGATGCTAATGGGAATCAACCTTTGGATGTGTTTGTTCGAGTTTCGAGGTTTGTGGCTAGTCCGAGGAGGAAAGCGGTTGA GTTGTTGCTGAGAGGAGGAGGTGTTGGAGGATTGATCGATGAGGCGGTTGAAGAAGAGATCAAGATTGTCTCTAAGTATCCAGCTGATGCTTCTTTACCG GATATAAACGAAGGGGTTTATGGAAGTGATGAGTTTAGGATGTATAGCTTTAAGGTTAAGCCATGTTCTAGGGCTTATTCTCATGATTGGACCGAGTGTG CTTTTGTTCATCCGGGAGAAAATGCGAGGAGGAGAGATCCGAGGAAGTATCCTTACACTTGTGTCCCCTGTCCCGAGTTCCGTAAAGGATCATGCCCGAA AGGAGATTCTTGCGAGTATGCTCACGGGGTTTTCGAGTCGTGGCTTCACCCCGCGCAGTATAAAACCCGGCTTTGTAAAGATGAAACGGGTTGTGCAAGG AAAGTTTGTTTCTTTGCTCATAAACGCGAAGAGATGAGACCTGTTAATGCTTCAACTGGCTCTGCCGTGGCTCAGTCTCCGTTTAGCAGCTTGGAGATGA TGCCAGGGTTGTCTCCTCTTGCTTATTCTTCAGGAGTTTCGACTCCTCCGGTTTCTCCAATGGCTAATGGTGTTCCTTCCTCTCCAAGAAACGGCGGATC ATGGCAGAACAGAGTCAATACCCTTACTCCACCGGCTTTGCAGCTCAATGGTGGAAGCAGATTGAAGTCCACACTGAGCGCTAGAGATATCGATATGGAG ATGGAGATGGAATTGAGACTCCGCGGTTTTGGCAACAATGTGGAAGAGACGTTCGGGTCTTATGTTTCCTCTCCAAGTAGGAATTCTCAAATGGGTCAAA ACATGAACCAACATTATCCATCTTCCCCGGTGAGACAACCGCCATCTCAACACGGGTTCGAATCTTCAGCAGCTGCAGCGGTTGCAGTGATGAAAGCGAG ATCAACCGCCTTTGCGAAACGTAGCTTGAGCTTCAAACCAGCTACTCAAGCAGCACCACAGTCGAATCTCTCGGATTGGGGATCTCCAAACGGGAAGCTG GAATGGGGAATGAAAGGAGAAGAGCTGAATAAGATGAGAAGAAGTGTTTCCTTTGGAATCCATGGAAACAACAACAATAACGCAGCTAGAGACTACAGGG ACGAGCCAGATGTGTCATGGGTTAACTCTTTAGTTAAAGACAGTACTGTGATGTCTGAGAGAAGCTTTGGAATGAATGAGAGGGTTCGGATAATGTCGTG GGCTGAGCAAATGTACAGAGAGAAGGAGCAGACTGTGGTG >RE_0455_translated MCSGPKSNLCSSRTLTEIESRQKEEETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDV NRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVSKYPADASLP DINEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCAR KVCFFAHKREEMRPVNASTGSAVAQSPFSSLEMMPGLSPLAYSSGVSTPPVSPMANGVPSSPRNGGSWQNRVNTLTPPALQLNGGSRLKSTLSARDIDME MEMELRLRGFGNNVEETFGSYVSSPSRNSQMGQNMNQHYPSSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSFKPATQAAPQSNLSDWGSPNGKL EWGMKGEELNKMRRSVSFGIHGNNNNNAARDYRDEPDVSWVNSLVKDSTVMSERSFGMNERVRIMSWAEQMYREKEQTVV |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 1739/1740 (99.9%)(アミノ酸配列で579/580 (99.8%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G55 ATGTGCAGTGGACCAAAGAGCAATCTCTGCTCTTCAAGAACCTTAACAGAAATCGAATCAAGGCAAAAGGAAGAAGAAACAATGCTTCTCCTCGAATTCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 ATGTGCAGTGGACCAAAGAGCAATCTCTGCTCTTCAAGAACCTTAACAGAAATCGAATCAAGGCAAAAGGAAGAAGAAACAATGCTTCTCCTCGAATTCG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G55 CTGCTTGTGATGATCTTGACTCGTTCAAGAGAGAGGTTGAAGAGAAAGGGCTTGATTTGGATGAGTCAGGGTTATGGTATTGCAGACGTGTCGGTTCTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 CTGCTTGTGATGATCTTGACTCGTTCAAGAGAGAGGTTGAAGAGAAAGGGCTTGATTTGGATGAGTCAGGGTTATGGTATTGCAGACGTGTCGGTTCTAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G55 GAAGATGGGTCTTGAAGAAAGAACACCTTTAATGGTTGCAGCTATGTATGGAAGCATAAAGGTTTTGACTTTCATCGTTTCCACTGGAAAATCTGATGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 GAAGATGGGTCTTGAAGAAAGAACACCTTTAATGGTTGCAGCTATGTATGGAAGCATAAAGGTTTTGACTTTCATCGTTTCCACTGGAAAATCTGATGTG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G55 AACAGAGCTTGTGGTGAAGAGAGAGTTACTCCGCTTCACTGTGCTGTTGCTGGCTGTTCTGTGAATATGATTGAAGTCATCAATGTCTTGCTTGATGCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 AACAGAGCTTGTGGTGAAGAGAGAGTTACTCCGCTTCACTGTGCTGTTGCTGGCTGTTCTGTGAATATGATTGAAGTCATCAATGTCTTGCTTGATGCTT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G55 CTGCTTTGGTTAACTCTGTTGATGCTAATGGGAATCAACCTTTGGATGTGTTTGTTCGAGTTTCGAGGTTTGTGGCTAGTCCGAGGAGGAAAGCGGTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 CTGCTTTGGTTAACTCTGTTGATGCTAATGGGAATCAACCTTTGGATGTGTTTGTTCGAGTTTCGAGGTTTGTGGCTAGTCCGAGGAGGAAAGCGGTTGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G55 GTTGTTGCTGAGAGGAGGAGGTGTTGGAGGATTGATCGATGAGGCGGTTGAAGAAGAGATCAAGATTGTCTCTAAGTATCCAGCTGATGCTTCTTTACCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 GTTGTTGCTGAGAGGAGGAGGTGTTGGAGGATTGATCGATGAGGCGGTTGAAGAAGAGATCAAGATTGTCTCTAAGTATCCAGCTGATGCTTCTTTACCG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G55 GATATAAACGAAGGGGTTTATGGAAGTGATGAGTTTAGGATGTATAGCTTTAAGGTTAAGCCATGTTCTAGGGCTTATTCTCATGATTGGACCGAGTGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 GATATAAACGAAGGGGTTTATGGAAGTGATGAGTTTAGGATGTATAGCTTTAAGGTTAAGCCATGTTCTAGGGCTTATTCTCATGATTGGACCGAGTGTG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G55 CTTTTGTTCATCCGGGAGAAAATGCGAGGAGGAGAGATCCGAGGAAGTATCCTTACACTTGTGTCCCCTGTCCCGAGTTCCGTAAAGGATCATGCCCGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 CTTTTGTTCATCCGGGAGAAAATGCGAGGAGGAGAGATCCGAGGAAGTATCCTTACACTTGTGTCCCCTGTCCCGAGTTCCGTAAAGGATCATGCCCGAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G55 AGGAGATTCTTGCGAGTATGCTCACGGGGTTTTCGAGTCGTGGCTTCACCCCGCGCAGTATAAAACCCGGCTTTGTAAAGATGAAACGGGTTGTGCAAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 AGGAGATTCTTGCGAGTATGCTCACGGGGTTTTCGAGTCGTGGCTTCACCCCGCGCAGTATAAAACCCGGCTTTGTAAAGATGAAACGGGTTGTGCAAGG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G55 AAAGTTTGTTTCTTTGCTCATAAACGCGAAGAGATGAGACCTGTTAATGCTTCAACTGGCTCTGCCGTGGCTCAGTCTCCGTTTAGCAGCTTGGAGATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 AAAGTTTGTTTCTTTGCTCATAAACGCGAAGAGATGAGACCTGTTAATGCTTCAACTGGCTCTGCCGTGGCTCAGTCTCCGTTTAGCAGCTTGGAGATGA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G55 TGCCAGGGTTGTCTCCTCTTGCTTATTCTTCAGGAGTTTCGACTCCTCCGGTTTCTCCAATGGCTAATGGTGTTCCTTCCTCTCCAAGAAACGGCGGATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 TGCCAGGGTTGTCTCCTCTTGCTTATTCTTCAGGAGTTTCGACTCCTCCGGTTTCTCCAATGGCTAATGGTGTTCCTTCCTCTCCAAGAAACGGCGGATC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G55 ATGGCAGAACAGAGTCAATACCCTTACTCCACCGGCTTTGCAGCTCAATGGTGGAAGCAGATTGAAGTCCACACTGAGCGCTAGAGATATCGATATGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 ATGGCAGAACAGAGTCAATACCCTTACTCCACCGGCTTTGCAGCTCAATGGTGGAAGCAGATTGAAGTCCACACTGAGCGCTAGAGATATCGATATGGAG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT3G55 ATGGAGATGGAATTGAGACTCCGCGGTTTTGGCAACAATGTGGAAGAGACGTTCGGGTCTTATGTTTCCTCTCCAAGTAGGAATTCTCAAATGGGTCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 ATGGAGATGGAATTGAGACTCCGCGGTTTTGGCAACAATGTGGAAGAGACGTTCGGGTCTTATGTTTCCTCTCCAAGTAGGAATTCTCAAATGGGTCAAA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT3G55 ACATGAACCAACATTATCCATCTTCCCCGGTGAGACAACCGCCATCTCAACACGGGTTCGAATCTTCAGCAGCTGCAGCGGTTGCAGTGATGAAAGCGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 ACATGAACCAACATTATCCATCTTCCCCGGTGAGACAACCGCCATCTCAACACGGGTTCGAATCTTCAGCAGCTGCAGCGGTTGCAGTGATGAAAGCGAG 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT3G55 ATCAACCGCCTTTGCGAAACGTAGCTTGAGCTTCAAACCAGCTACTCAAGCAGCACCACAGTCGAATCTCTCGGATTGGGGATCTCCAAACGGGAAGCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 ATCAACCGCCTTTGCGAAACGTAGCTTGAGCTTCAAACCAGCTACTCAAGCAGCACCACAGTCGAATCTCTCGGATTGGGGATCTCCAAACGGGAAGCTG 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT3G55 GAATGGGGAATGAAAGGAGAAGAGCTGAATAAGATGAGAAGAAGTGTTTCCTTTGGAATCCATGGAAACAACAACAATAACGCAGCTAGAGACTACAGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 GAATGGGGAATGAAAGGAGAAGAGCTGAATAAGATGAGAAGAAGTGTTTCCTTTGGAATCCATGGAAACAACAACAATAACGCAGCTAGAGACTACAGGG 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT3G55 ACGAGCCAGATGTGTCATGGGTTAACTCTTTAGTTAAAGACAGTACTGTGGTGTCTGAGAGAAGCTTTGGAATGAATGAGAGGGTTCGGATAATGTCGTG :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 ACGAGCCAGATGTGTCATGGGTTAACTCTTTAGTTAAAGACAGTACTGTGATGTCTGAGAGAAGCTTTGGAATGAATGAGAGGGTTCGGATAATGTCGTG 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 AT3G55 GGCTGAGCAAATGTACAGAGAGAAGGAGCAGACTGTGGTG :::::::::::::::::::::::::::::::::::::::: RE_045 GGCTGAGCAAATGTACAGAGAGAAGGAGCAGACTGTGGTG 1710 1720 1730 1740 10 20 30 40 50 60 70 80 90 100 AT3G55 MCSGPKSNLCSSRTLTEIESRQKEEETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 MCSGPKSNLCSSRTLTEIESRQKEEETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDV 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G55 NRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVSKYPADASLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 NRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVSKYPADASLP 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G55 DINEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 DINEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCAR 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G55 KVCFFAHKREEMRPVNASTGSAVAQSPFSSLEMMPGLSPLAYSSGVSTPPVSPMANGVPSSPRNGGSWQNRVNTLTPPALQLNGGSRLKSTLSARDIDME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 KVCFFAHKREEMRPVNASTGSAVAQSPFSSLEMMPGLSPLAYSSGVSTPPVSPMANGVPSSPRNGGSWQNRVNTLTPPALQLNGGSRLKSTLSARDIDME 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G55 MEMELRLRGFGNNVEETFGSYVSSPSRNSQMGQNMNQHYPSSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSFKPATQAAPQSNLSDWGSPNGKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_045 MEMELRLRGFGNNVEETFGSYVSSPSRNSQMGQNMNQHYPSSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSFKPATQAAPQSNLSDWGSPNGKL 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 AT3G55 EWGMKGEELNKMRRSVSFGIHGNNNNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTVV ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: RE_045 EWGMKGEELNKMRRSVSFGIHGNNNNNAARDYRDEPDVSWVNSLVKDSTVMSERSFGMNERVRIMSWAEQMYREKEQTVV 510 520 530 540 550 560 570 580 |