◆◆◆RE_0461 detail◆◆◆

Code name	RE_0461
Locus	AT5G56900
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.30%一致
comment	0428_アミノ酸配列70%以上一致
sequence	>RE_0461_1212bp ATGGAAGTTAAACCTTGCTATCACATTGCAGGTTCTATAGGGGTATTTTATGCCCGTGAACCTTACCTCAACGCTGAATCTACTCATGTAACTCGCTTTA TTGGTCTTGCTCAAGTTGGAAATAAAAACAAACAGAAATTTCTTCATGCGCTTTCTCCTACACCAACATCTACCATGTCACCAGCAGAGCTTAGTGCAAA GCCTCCAAAAACTACGCTATGGCCTTATAATTTACAAGATGGAGCTGCTGAATCGAAGAAGAGGCCAAACGATAGTGACTCTGATTCACAGTATTGGAGG TATGATGTCCCAAAGCGGCAAAAGAGTGGATCTCAAGGGGAAAAGCTCTGTTTCAAATTTGTCTGCTCAGGTTCCTGTCCTCGTGGTGAAGATTGCCATT TCCAACACAACGCTGAAGCAAGAGAACAGTGTCGTAGAGGTGTTTGTCTTGATCTTATCATCACAGGTAAGTGTGAAAAAGGCCCAGAGTGCAGCTACAA GCATGAGTTTCAAGATGAAAGTAGCATACAAAGGAAGCCCAGATCTGAGAATGCTAACAGGTCAAAAGAATGCTGGTTTTGTCTATCAAGCCCGAGTGTG GAGTCACATTTAATCGTCAGTGTAGGGGAAAGTTTTTATTGTGCTCTACCCAAAGGTTCGCTAGTCGAAGATCACATATTGATAATCCCAATCGAACATT TGCCCAATACTCTGGTTTTATCCCCTGAGGTTGAATCAGAGCTCAGTAGATACCAAAATGGTCTGAGAAATTGTTATAAGAGCCAAGGAAATGATGCAGT TTTCTTTGAATTGGTCTCTAAACGTGTTTCTCATGCTAACCTCCAAGTTGTTCCTGTTCCATCATCCAGAGCTCGTCTTCTTCCTAATATCTTTAGTCTG GCGGCTGAAAAACTGGGCTTTAAGCTTGTGACTAAAAAGTTTAATGATAGTACTGATGGCAGAAAATATCTGCAGAAGGAATATAATGCGGCATTGGGTC TCTTCTATGTGGAACTTCCTGATGGAACTGTGCTATCACACACCTTGGAAGAAAACGAAGTATTCCCTGCGCAGTTTGGACGGGAGGTTCTAGCAGGGTT GCTAAAGATCCCAGATAGGGCCGATTGGAGAAACTGTAAAATTAGCCAAGAAGAGGAGGCAAAGCTGGCTGAAGATTTCAAGAAACAATTTCAAGAATTT GACCCTTGCCAA >RE_0461_translated MEVKPCYHIAGSIGVFYAREPYLNAESTHVTRFIGLAQVGNKNKQKFLHALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESKKRPNDSDSDSQYWR YDVPKRQKSGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIITGKCEKGPECSYKHEFQDESSIQRKPRSENANRSKECWFCLSSPSV ESHLIVSVGESFYCALPKGSLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQVVPVPSSRARLLPNIFSL AAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFYVELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEF DPCQ
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1209/1212 (99.8%)（アミノ酸配列で401/404 (99.3%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G56 ATGGAAGTTAAACCTCGCTATCACATTGCAGGTTCTATGGGGGTATTTTATGCCCGTGAACCTTACCTCAACGCTGAATCTACTCATGTAACTCGCTTTA ::::::::::::::: :::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 ATGGAAGTTAAACCTTGCTATCACATTGCAGGTTCTATAGGGGTATTTTATGCCCGTGAACCTTACCTCAACGCTGAATCTACTCATGTAACTCGCTTTA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G56 TTGGTCTTGCTCAAGTTGGAAATAAAAACAAACAGAAATTTCTTCATGCGCTTTCTCCTACACCAACATCTACCATGTCACCAGCAGAGCTTAGTGCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 TTGGTCTTGCTCAAGTTGGAAATAAAAACAAACAGAAATTTCTTCATGCGCTTTCTCCTACACCAACATCTACCATGTCACCAGCAGAGCTTAGTGCAAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G56 GCCTCCAAAAACTACGCTATGGCCTTATAATTTACAAGATGGAGCTGCTGAATCGAAGAAGAGGCCAAACGATAGTGACTCTGATTCACAGTATTGGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 GCCTCCAAAAACTACGCTATGGCCTTATAATTTACAAGATGGAGCTGCTGAATCGAAGAAGAGGCCAAACGATAGTGACTCTGATTCACAGTATTGGAGG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G56 TATGATGTCCCAAAGCGGCAAAAGAGTGGATCTCAAGGGGAAAAGCTCTGTTTCAAATTTGTCTGCTCAGGTTCCTGTCCTCGTGGTGAAGATTGCCATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 TATGATGTCCCAAAGCGGCAAAAGAGTGGATCTCAAGGGGAAAAGCTCTGTTTCAAATTTGTCTGCTCAGGTTCCTGTCCTCGTGGTGAAGATTGCCATT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G56 TCCAACACAACGCTGAAGCAAGAGAACAGTGTCGTAGAGGTGTTTGTCTTGATCTTATCATCAAAGGTAAGTGTGAAAAAGGCCCAGAGTGCAGCTACAA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: RE_046 TCCAACACAACGCTGAAGCAAGAGAACAGTGTCGTAGAGGTGTTTGTCTTGATCTTATCATCACAGGTAAGTGTGAAAAAGGCCCAGAGTGCAGCTACAA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G56 GCATGAGTTTCAAGATGAAAGTAGCATACAAAGGAAGCCCAGATCTGAGAATGCTAACAGGTCAAAAGAATGCTGGTTTTGTCTATCAAGCCCGAGTGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 GCATGAGTTTCAAGATGAAAGTAGCATACAAAGGAAGCCCAGATCTGAGAATGCTAACAGGTCAAAAGAATGCTGGTTTTGTCTATCAAGCCCGAGTGTG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G56 GAGTCACATTTAATCGTCAGTGTAGGGGAAAGTTTTTATTGTGCTCTACCCAAAGGTTCGCTAGTCGAAGATCACATATTGATAATCCCAATCGAACATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 GAGTCACATTTAATCGTCAGTGTAGGGGAAAGTTTTTATTGTGCTCTACCCAAAGGTTCGCTAGTCGAAGATCACATATTGATAATCCCAATCGAACATT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G56 TGCCCAATACTCTGGTTTTATCCCCTGAGGTTGAATCAGAGCTCAGTAGATACCAAAATGGTCTGAGAAATTGTTATAAGAGCCAAGGAAATGATGCAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 TGCCCAATACTCTGGTTTTATCCCCTGAGGTTGAATCAGAGCTCAGTAGATACCAAAATGGTCTGAGAAATTGTTATAAGAGCCAAGGAAATGATGCAGT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G56 TTTCTTTGAATTGGTCTCTAAACGTGTTTCTCATGCTAACCTCCAAGTTGTTCCTGTTCCATCATCCAGAGCTCGTCTTCTTCCTAATATCTTTAGTCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 TTTCTTTGAATTGGTCTCTAAACGTGTTTCTCATGCTAACCTCCAAGTTGTTCCTGTTCCATCATCCAGAGCTCGTCTTCTTCCTAATATCTTTAGTCTG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G56 GCGGCTGAAAAACTGGGCTTTAAGCTTGTGACTAAAAAGTTTAATGATAGTACTGATGGCAGAAAATATCTGCAGAAGGAATATAATGCGGCATTGGGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 GCGGCTGAAAAACTGGGCTTTAAGCTTGTGACTAAAAAGTTTAATGATAGTACTGATGGCAGAAAATATCTGCAGAAGGAATATAATGCGGCATTGGGTC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G56 TCTTCTATGTGGAACTTCCTGATGGAACTGTGCTATCACACACCTTGGAAGAAAACGAAGTATTCCCTGCGCAGTTTGGACGGGAGGTTCTAGCAGGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 TCTTCTATGTGGAACTTCCTGATGGAACTGTGCTATCACACACCTTGGAAGAAAACGAAGTATTCCCTGCGCAGTTTGGACGGGAGGTTCTAGCAGGGTT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G56 GCTAAAGATCCCAGATAGGGCCGATTGGAGAAACTGTAAAATTAGCCAAGAAGAGGAGGCAAAGCTGGCTGAAGATTTCAAGAAACAATTTCAAGAATTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 GCTAAAGATCCCAGATAGGGCCGATTGGAGAAACTGTAAAATTAGCCAAGAAGAGGAGGCAAAGCTGGCTGAAGATTTCAAGAAACAATTTCAAGAATTT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 AT5G56 GACCCTTGCCAA :::::::::::: RE_046 GACCCTTGCCAA 1210 10 20 30 40 50 60 70 80 90 100 AT5G56 MEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNKNKQKFLHALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESKKRPNDSDSDSQYWR ::::: ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 MEVKPCYHIAGSIGVFYAREPYLNAESTHVTRFIGLAQVGNKNKQKFLHALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESKKRPNDSDSDSQYWR 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G56 YDVPKRQKSGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGKCEKGPECSYKHEFQDESSIQRKPRSENANRSKECWFCLSSPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: RE_046 YDVPKRQKSGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIITGKCEKGPECSYKHEFQDESSIQRKPRSENANRSKECWFCLSSPSV 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G56 ESHLIVSVGESFYCALPKGSLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQVVPVPSSRARLLPNIFSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 ESHLIVSVGESFYCALPKGSLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQVVPVPSSRARLLPNIFSL 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G56 AAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFYVELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 AAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFYVELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEF 310 320 330 340 350 360 370 380 390 400 AT5G56 DPCQ :::: RE_046 DPCQ

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