◆◆◆RE_0462 detail◆◆◆

Code name	RE_0462
Locus	AT5G58620
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0462_1821bp ATGGGAGTTGATGAGCTGTCTCACCTCAAATTCTCTCTTCTGCTAGAATCATCAGCCTGCAATGATTTGTCCGGTTTTAAGTCTCTAGTTGAAGAAGAAG GTCTTGAGAGCATTGATGGCTCTGGTTTGTGGTATGGGAGGAGATTAGGATCAAAGAAGATGGGTTTTGAGGAGAGGACGCCTCTTATGATTGCTGCCTT GTTTGGAAGCAAAGAGGTTGTTGATTACATCATTAGTACTGGTCTTGTTGACGTGAACCGCTCTTGTGGCTCTGATGGTGCCACGGCTCTTCACTGTGCG GTCTCTGGCTTGTCTGCCAATAGCCTTGAGATTGTTACTCTTCTGCTGAAGGGCTCTGCGAATCCGGATTCTTGTGATGCTTATGGTAACAAGCCTGGAG ATGTGATTTTCCCTTGTTTGAGTCCGGTTTTTAGCGCGAGGATGAAGGTTTTGGAGCGTTTGTTGAAAGCAAATGATGATTTGAATGAAGTTAATGGGCA AGAAGAAAGCGAGCCAGAGGTTGAGGTTGAGGTTGAGGTTTCGCCTCCTCGGGGGTCTGAGAGGAAGGAGTATCCGGTTGATCCAACGCTTCCTGATATC AAGAACGGTGTATATGGGACGGATGAGTTCCGGATGTATGCTTTCAAGATCAAGCCGTGCTCTAGAGCATACTCTCACGACTGGACGGAATGTCCCTTTG TTCATCCGGGTGAGAACGCAAGGAGGCGTGATCCGAGGAAGTACCATTATAGTTGTGTCCCTTGTCCTGAATTCCGGAAGGGGTCTTGTTCCAGAGGTGA TACTTGCGAGTATGCTCATGGTATCTTTGAGTGCTGGCTTCACCCGGCTCAGTACCGGACTCGTCTCTGCAAGGACGAGACGAATTGCTCGAGAAGAGTT TGTTTCTTTGCCCACAAACCCGAGGAGCTGCGTCCTTTGTACCCTTCAACTGGATCAGGTGTTCCGTCCCCGCGGTCTTCCTTCTCATCTTGCAATTCCT CGACCGCTTTCGACATGGGACCGATTAGTCCGCTTCCTATCGGAGCAACAACCACACCTCCTTTGAGTCCTAACGGTGTATCCTCTCCAATAGGTGGAGG AAAAACGTGGATGAACTGGCCTAACATAACCCCTCCTGCATTGCAGCTTCCAGGGAGCAGATTGAAATCTGCATTGAATGCAAGAGAAATCGATTTCTCT GAAGAGATGCAAAGTCTTACTTCTCCAACTACATGGAACAACACGCCAATGTCATCTCCATTCTCCGGAAAGGGCATGAACAGGCTTGCAGGAGGAGCAA TGAGCCCGGTGAATAGTCTCAGTGATATGTTTGGGACAGAGGATAATACATCGGGTTTGCAGATCCGACGCAGCGTCATTAACCCGCAGCTGCATTCCAA CAGTCTTTCTTCATCACCTGTGGGAGCCAATTCTCTGTTTTCGATGGATTCCTCCGCAGTCTTGGCTTCAAGAGCGGCTGAATTTGCTAAACAGCGAAGC CAAAGCTTCATAGAACGCAACAACGGACTGAATCACCATCCCGCAATCTCTTCCATGACTACAACTTGTTTAAACGATTGGGGCTCATTGGATGGGAAGC TTGACTGGAGCGTCCAAGGAGACGAGCTACAGAAGCTCAGAAAATCCACTTCTTTCCGTCTCAGAGCCGGTGGCATGGAATCAAGACTGCCTAACGAAGG GACTGGGCTCGAAGAGCCAGATGTCTCATGGGTGGAGCCGCTGGTGAAAGAGCCACAGGAGACAAGACTAGCTCCGGTTTGGATGGAGCAATCATACATG GAGACAGAACAGACCGTGGCT >RE_0462_translated MGVDELSHLKFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCA VSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKANDDLNEVNGQEESEPEVEVEVEVSPPRGSERKEYPVDPTLPDI KNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLCKDETNCSRRV CFFAHKPEELRPLYPSTGSGVPSPRSSFSSCNSSTAFDMGPISPLPIGATTTPPLSPNGVSSPIGGGKTWMNWPNITPPALQLPGSRLKSALNAREIDFS EEMQSLTSPTTWNNTPMSSPFSGKGMNRLAGGAMSPVNSLSDMFGTEDNTSGLQIRRSVINPQLHSNSLSSSPVGANSLFSMDSSAVLASRAAEFAKQRS QSFIERNNGLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPNEGTGLEEPDVSWVEPLVKEPQETRLAPVWMEQSYM ETEQTVA
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1820/1821 (99.9%)（アミノ酸配列で606/607 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G58 ATGGGAGTTGATGAGCTGTCTCACCTCAAATTCTCTCTTCTGCTAGAATCATCAGCCTGCAATGATTTGTCCGGTTTTAAGTCTCTAGTTGAAGAAGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 ATGGGAGTTGATGAGCTGTCTCACCTCAAATTCTCTCTTCTGCTAGAATCATCAGCCTGCAATGATTTGTCCGGTTTTAAGTCTCTAGTTGAAGAAGAAG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G58 GTCTTGAGAGCATTGATGGCTCTGGTTTGTGGTATGGGAGGAGATTAGGATCAAAGAAGATGGGTTTTGAGGAGAGGACGCCTCTTATGATTGCTGCCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 GTCTTGAGAGCATTGATGGCTCTGGTTTGTGGTATGGGAGGAGATTAGGATCAAAGAAGATGGGTTTTGAGGAGAGGACGCCTCTTATGATTGCTGCCTT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G58 GTTTGGAAGCAAAGAGGTTGTTGATTACATCATTAGTACTGGTCTTGTTGACGTGAACCGCTCTTGTGGCTCTGATGGTGCCACGGCTCTTCACTGTGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 GTTTGGAAGCAAAGAGGTTGTTGATTACATCATTAGTACTGGTCTTGTTGACGTGAACCGCTCTTGTGGCTCTGATGGTGCCACGGCTCTTCACTGTGCG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G58 GTCTCTGGCTTGTCTGCCAATAGCCTTGAGATTGTTACTCTTCTGCTGAAGGGCTCTGCGAATCCGGATTCTTGTGATGCTTATGGTAACAAGCCTGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 GTCTCTGGCTTGTCTGCCAATAGCCTTGAGATTGTTACTCTTCTGCTGAAGGGCTCTGCGAATCCGGATTCTTGTGATGCTTATGGTAACAAGCCTGGAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G58 ATGTGATTTTCCCTTGTTTGAGTCCGGTTTTTAGCGCGAGGATGAAGGTTTTGGAGCGTTTGTTGAAAGGAAATGATGATTTGAATGAAGTTAATGGGCA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: RE_046 ATGTGATTTTCCCTTGTTTGAGTCCGGTTTTTAGCGCGAGGATGAAGGTTTTGGAGCGTTTGTTGAAAGCAAATGATGATTTGAATGAAGTTAATGGGCA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G58 AGAAGAAAGCGAGCCAGAGGTTGAGGTTGAGGTTGAGGTTTCGCCTCCTCGGGGGTCTGAGAGGAAGGAGTATCCGGTTGATCCAACGCTTCCTGATATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 AGAAGAAAGCGAGCCAGAGGTTGAGGTTGAGGTTGAGGTTTCGCCTCCTCGGGGGTCTGAGAGGAAGGAGTATCCGGTTGATCCAACGCTTCCTGATATC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G58 AAGAACGGTGTATATGGGACGGATGAGTTCCGGATGTATGCTTTCAAGATCAAGCCGTGCTCTAGAGCATACTCTCACGACTGGACGGAATGTCCCTTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 AAGAACGGTGTATATGGGACGGATGAGTTCCGGATGTATGCTTTCAAGATCAAGCCGTGCTCTAGAGCATACTCTCACGACTGGACGGAATGTCCCTTTG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G58 TTCATCCGGGTGAGAACGCAAGGAGGCGTGATCCGAGGAAGTACCATTATAGTTGTGTCCCTTGTCCTGAATTCCGGAAGGGGTCTTGTTCCAGAGGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 TTCATCCGGGTGAGAACGCAAGGAGGCGTGATCCGAGGAAGTACCATTATAGTTGTGTCCCTTGTCCTGAATTCCGGAAGGGGTCTTGTTCCAGAGGTGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G58 TACTTGCGAGTATGCTCATGGTATCTTTGAGTGCTGGCTTCACCCGGCTCAGTACCGGACTCGTCTCTGCAAGGACGAGACGAATTGCTCGAGAAGAGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 TACTTGCGAGTATGCTCATGGTATCTTTGAGTGCTGGCTTCACCCGGCTCAGTACCGGACTCGTCTCTGCAAGGACGAGACGAATTGCTCGAGAAGAGTT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G58 TGTTTCTTTGCCCACAAACCCGAGGAGCTGCGTCCTTTGTACCCTTCAACTGGATCAGGTGTTCCGTCCCCGCGGTCTTCCTTCTCATCTTGCAATTCCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 TGTTTCTTTGCCCACAAACCCGAGGAGCTGCGTCCTTTGTACCCTTCAACTGGATCAGGTGTTCCGTCCCCGCGGTCTTCCTTCTCATCTTGCAATTCCT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G58 CGACCGCTTTCGACATGGGACCGATTAGTCCGCTTCCTATCGGAGCAACAACCACACCTCCTTTGAGTCCTAACGGTGTATCCTCTCCAATAGGTGGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 CGACCGCTTTCGACATGGGACCGATTAGTCCGCTTCCTATCGGAGCAACAACCACACCTCCTTTGAGTCCTAACGGTGTATCCTCTCCAATAGGTGGAGG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G58 AAAAACGTGGATGAACTGGCCTAACATAACCCCTCCTGCATTGCAGCTTCCAGGGAGCAGATTGAAATCTGCATTGAATGCAAGAGAAATCGATTTCTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 AAAAACGTGGATGAACTGGCCTAACATAACCCCTCCTGCATTGCAGCTTCCAGGGAGCAGATTGAAATCTGCATTGAATGCAAGAGAAATCGATTTCTCT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT5G58 GAAGAGATGCAAAGTCTTACTTCTCCAACTACATGGAACAACACGCCAATGTCATCTCCATTCTCCGGAAAGGGCATGAACAGGCTTGCAGGAGGAGCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 GAAGAGATGCAAAGTCTTACTTCTCCAACTACATGGAACAACACGCCAATGTCATCTCCATTCTCCGGAAAGGGCATGAACAGGCTTGCAGGAGGAGCAA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT5G58 TGAGCCCGGTGAATAGTCTCAGTGATATGTTTGGGACAGAGGATAATACATCGGGTTTGCAGATCCGACGCAGCGTCATTAACCCGCAGCTGCATTCCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 TGAGCCCGGTGAATAGTCTCAGTGATATGTTTGGGACAGAGGATAATACATCGGGTTTGCAGATCCGACGCAGCGTCATTAACCCGCAGCTGCATTCCAA 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT5G58 CAGTCTTTCTTCATCACCTGTGGGAGCCAATTCTCTGTTTTCGATGGATTCCTCCGCAGTCTTGGCTTCAAGAGCGGCTGAATTTGCTAAACAGCGAAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 CAGTCTTTCTTCATCACCTGTGGGAGCCAATTCTCTGTTTTCGATGGATTCCTCCGCAGTCTTGGCTTCAAGAGCGGCTGAATTTGCTAAACAGCGAAGC 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT5G58 CAAAGCTTCATAGAACGCAACAACGGACTGAATCACCATCCCGCAATCTCTTCCATGACTACAACTTGTTTAAACGATTGGGGCTCATTGGATGGGAAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 CAAAGCTTCATAGAACGCAACAACGGACTGAATCACCATCCCGCAATCTCTTCCATGACTACAACTTGTTTAAACGATTGGGGCTCATTGGATGGGAAGC 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT5G58 TTGACTGGAGCGTCCAAGGAGACGAGCTACAGAAGCTCAGAAAATCCACTTCTTTCCGTCTCAGAGCCGGTGGCATGGAATCAAGACTGCCTAACGAAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 TTGACTGGAGCGTCCAAGGAGACGAGCTACAGAAGCTCAGAAAATCCACTTCTTTCCGTCTCAGAGCCGGTGGCATGGAATCAAGACTGCCTAACGAAGG 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT5G58 GACTGGGCTCGAAGAGCCAGATGTCTCATGGGTGGAGCCGCTGGTGAAAGAGCCACAGGAGACAAGACTAGCTCCGGTTTGGATGGAGCAATCATACATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 GACTGGGCTCGAAGAGCCAGATGTCTCATGGGTGGAGCCGCTGGTGAAAGAGCCACAGGAGACAAGACTAGCTCCGGTTTGGATGGAGCAATCATACATG 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 AT5G58 GAGACAGAACAGACCGTGGCT ::::::::::::::::::::: RE_046 GAGACAGAACAGACCGTGGCT 1810 1820 10 20 30 40 50 60 70 80 90 100 AT5G58 MGVDELSHLKFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 MGVDELSHLKFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G58 VSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNEVNGQEESEPEVEVEVEVSPPRGSERKEYPVDPTLPDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: RE_046 VSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKANDDLNEVNGQEESEPEVEVEVEVSPPRGSERKEYPVDPTLPDI 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G58 KNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLCKDETNCSRRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 KNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLCKDETNCSRRV 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G58 CFFAHKPEELRPLYPSTGSGVPSPRSSFSSCNSSTAFDMGPISPLPIGATTTPPLSPNGVSSPIGGGKTWMNWPNITPPALQLPGSRLKSALNAREIDFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 CFFAHKPEELRPLYPSTGSGVPSPRSSFSSCNSSTAFDMGPISPLPIGATTTPPLSPNGVSSPIGGGKTWMNWPNITPPALQLPGSRLKSALNAREIDFS 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G58 EEMQSLTSPTTWNNTPMSSPFSGKGMNRLAGGAMSPVNSLSDMFGTEDNTSGLQIRRSVINPQLHSNSLSSSPVGANSLFSMDSSAVLASRAAEFAKQRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 EEMQSLTSPTTWNNTPMSSPFSGKGMNRLAGGAMSPVNSLSDMFGTEDNTSGLQIRRSVINPQLHSNSLSSSPVGANSLFSMDSSAVLASRAAEFAKQRS 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G58 QSFIERNNGLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPNEGTGLEEPDVSWVEPLVKEPQETRLAPVWMEQSYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_046 QSFIERNNGLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPNEGTGLEEPDVSWVEPLVKEPQETRLAPVWMEQSYM 510 520 530 540 550 560 570 580 590 600 AT5G58 ETEQTVA ::::::: RE_046 ETEQTVA

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