◆◆◆RE_0478 detail◆◆◆

Code name	RE_0478
Locus	AT3G47500
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0422_アミノ酸配列100%一致
sequence	>RE_0478_1344bp ATGATGATGGAGACTAGAGATCCAGCTATCAAGCTTTTCGGTATGAAAATCCCTTTTCCGTCGGTTTTTGAATCGGCAGTTACGGTGGAGGATGACGAAG AAGATGACTGGAGCGGCGGAGATGACAAATCACCAGAGAAGGTAACTCCAGAGTTATCAGATAAGAACAACAACAACTGTAACGACAACAGTTTTAACAA TTCGAAACCCGAAACCTTGGACAAAGAGGAAGCGACATCAACTGATCAGATAGAGAGTAGTGACACGCCTGAGGATAATCAGCAGACGACACCTGATGGT AAAACCCTAAAGAAACCGACTAAGATTCTACCGTGTCCGAGATGCAAAAGCATGGAGACCAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTC GTCATTTCTGCAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCTGTGGGGGCAGGACGTCGTAAGAACAAAAGCTCGTCTTC TCATTACCGTCACATCACTATTTCCGAGGCTCTTGAGGCTGCGAGGCTTGACCCGGGCTTACAGGCAAACACAAGGGTCTTGAGTTTTGGTCTCGAAGCT CAGCAGCAGCACGTTGCTGCTCCCATGACACCTGTGATGAAGCTACAAGAAGATCAAAAGGTCTCAAACGGTGCTAGGAACAGGTTTCACGGGTTAGCGG ATCAACGGCTTGTAGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAACAATCACTCAGTGGATGAATCAAGAGCACA AAGCGGCAGTGTTGTTGAAGCACAAATGAACAACAACAACAACAATAACATGAATGGTTATGCTTGCATCCCAGGTGTTCCATGGCCTTACACGTGGAAT CCAGCGATGCCTCCACCAGGTTTTTACCCGCCTCCAGGGTATCCAATGCCGTTTTACCCTTACTGGACCATCCCAATGCTACCACCGCATCAATCCTCAT CGCCTATAAGCCAAAAGTGTTCAAATACAAACTCTCCGACTCTCGGAAAGCATCCGAGAGATGAAGGATCATCGAAAAAGGACAACGAGACAGAGCGAAA ACAGAAGGCCGGGTGCGTTCTGGTCCCGAAAACGTTGAGAATAGATGATCCTAACGAAGCAGCAAAGAGCTCGATATGGACAACATTGGGAATCAAGAAC GAGGCGATGTGCAAAGCCGGTGGTATGTTCAAAGGGTTTGATCATAAGACAAAGATGTATAACAACGACAAAGCTGAGAACTCCCCTGTTCTTTCTGCTA ACCCTGCTGCTCTATCAAGATCACACAATTTCCATGAACAGATT >RE_0478_translated MMMETRDPAIKLFGMKIPFPSVFESAVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNCNDNSFNNSKPETLDKEEATSTDQIESSDTPEDNQQTTPDG KTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRHITISEALEAARLDPGLQANTRVLSFGLEA QQQHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQRLVARVENGDDCSSGSSVTTSNNHSVDESRAQSGSVVEAQMNNNNNNNMNGYACIPGVPWPYTWN PAMPPPGFYPPPGYPMPFYPYWTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDNETERKQKAGCVLVPKTLRIDDPNEAAKSSIWTTLGIKN EAMCKAGGMFKGFDHKTKMYNNDKAENSPVLSANPAALSRSHNFHEQI
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1342/1344 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G47 ATGATGATGGAGACTAGAGATCCAGCTATTAAGCTTTTCGGTATGAAAATCCCTTTTCCGTCGGTTTTTGAATCGGCAGTTACGGTGGAGGATGACGAAG ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 ATGATGATGGAGACTAGAGATCCAGCTATCAAGCTTTTCGGTATGAAAATCCCTTTTCCGTCGGTTTTTGAATCGGCAGTTACGGTGGAGGATGACGAAG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G47 AAGATGACTGGAGCGGCGGAGATGACAAATCACCAGAGAAGGTAACTCCAGAGTTATCAGATAAGAACAACAACAACTGTAACGACAACAGTTTTAACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 AAGATGACTGGAGCGGCGGAGATGACAAATCACCAGAGAAGGTAACTCCAGAGTTATCAGATAAGAACAACAACAACTGTAACGACAACAGTTTTAACAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G47 TTCGAAACCCGAAACCTTGGACAAAGAGGAAGCGACATCAACTGATCAGATAGAGAGTAGTGACACGCCTGAGGATAATCAGCAGACGACACCTGATGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 TTCGAAACCCGAAACCTTGGACAAAGAGGAAGCGACATCAACTGATCAGATAGAGAGTAGTGACACGCCTGAGGATAATCAGCAGACGACACCTGATGGT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G47 AAAACCCTAAAGAAACCGACTAAGATTCTACCGTGTCCGAGATGCAAAAGCATGGAGACCAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 AAAACCCTAAAGAAACCGACTAAGATTCTACCGTGTCCGAGATGCAAAAGCATGGAGACCAAGTTCTGTTATTACAACAACTACAACATAAACCAGCCTC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G47 GTCATTTCTGCAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCTGTGGGGGCAGGACGTCGTAAGAACAAAAGCTCATCTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: RE_047 GTCATTTCTGCAAGGCTTGTCAGAGATATTGGACTGCTGGAGGGACTATGAGGAATGTTCCTGTGGGGGCAGGACGTCGTAAGAACAAAAGCTCGTCTTC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G47 TCATTACCGTCACATCACTATTTCCGAGGCTCTTGAGGCTGCGAGGCTTGACCCGGGCTTACAGGCAAACACAAGGGTCTTGAGTTTTGGTCTCGAAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 TCATTACCGTCACATCACTATTTCCGAGGCTCTTGAGGCTGCGAGGCTTGACCCGGGCTTACAGGCAAACACAAGGGTCTTGAGTTTTGGTCTCGAAGCT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G47 CAGCAGCAGCACGTTGCTGCTCCCATGACACCTGTGATGAAGCTACAAGAAGATCAAAAGGTCTCAAACGGTGCTAGGAACAGGTTTCACGGGTTAGCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 CAGCAGCAGCACGTTGCTGCTCCCATGACACCTGTGATGAAGCTACAAGAAGATCAAAAGGTCTCAAACGGTGCTAGGAACAGGTTTCACGGGTTAGCGG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G47 ATCAACGGCTTGTAGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAACAATCACTCAGTGGATGAATCAAGAGCACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 ATCAACGGCTTGTAGCTCGGGTAGAGAATGGAGATGATTGCTCAAGCGGATCCTCTGTGACCACCTCTAACAATCACTCAGTGGATGAATCAAGAGCACA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G47 AAGCGGCAGTGTTGTTGAAGCACAAATGAACAACAACAACAACAATAACATGAATGGTTATGCTTGCATCCCAGGTGTTCCATGGCCTTACACGTGGAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 AAGCGGCAGTGTTGTTGAAGCACAAATGAACAACAACAACAACAATAACATGAATGGTTATGCTTGCATCCCAGGTGTTCCATGGCCTTACACGTGGAAT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G47 CCAGCGATGCCTCCACCAGGTTTTTACCCGCCTCCAGGGTATCCAATGCCGTTTTACCCTTACTGGACCATCCCAATGCTACCACCGCATCAATCCTCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 CCAGCGATGCCTCCACCAGGTTTTTACCCGCCTCCAGGGTATCCAATGCCGTTTTACCCTTACTGGACCATCCCAATGCTACCACCGCATCAATCCTCAT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G47 CGCCTATAAGCCAAAAGTGTTCAAATACAAACTCTCCGACTCTCGGAAAGCATCCGAGAGATGAAGGATCATCGAAAAAGGACAACGAGACAGAGCGAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 CGCCTATAAGCCAAAAGTGTTCAAATACAAACTCTCCGACTCTCGGAAAGCATCCGAGAGATGAAGGATCATCGAAAAAGGACAACGAGACAGAGCGAAA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G47 ACAGAAGGCCGGGTGCGTTCTGGTCCCGAAAACGTTGAGAATAGATGATCCTAACGAAGCAGCAAAGAGCTCGATATGGACAACATTGGGAATCAAGAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 ACAGAAGGCCGGGTGCGTTCTGGTCCCGAAAACGTTGAGAATAGATGATCCTAACGAAGCAGCAAAGAGCTCGATATGGACAACATTGGGAATCAAGAAC 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT3G47 GAGGCGATGTGCAAAGCCGGTGGTATGTTCAAAGGGTTTGATCATAAGACAAAGATGTATAACAACGACAAAGCTGAGAACTCCCCTGTTCTTTCTGCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 GAGGCGATGTGCAAAGCCGGTGGTATGTTCAAAGGGTTTGATCATAAGACAAAGATGTATAACAACGACAAAGCTGAGAACTCCCCTGTTCTTTCTGCTA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 AT3G47 ACCCTGCTGCTCTATCAAGATCACACAATTTCCATGAACAGATT :::::::::::::::::::::::::::::::::::::::::::: RE_047 ACCCTGCTGCTCTATCAAGATCACACAATTTCCATGAACAGATT 1310 1320 1330 1340 10 20 30 40 50 60 70 80 90 100 AT3G47 MMMETRDPAIKLFGMKIPFPSVFESAVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNCNDNSFNNSKPETLDKEEATSTDQIESSDTPEDNQQTTPDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 MMMETRDPAIKLFGMKIPFPSVFESAVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNCNDNSFNNSKPETLDKEEATSTDQIESSDTPEDNQQTTPDG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G47 KTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRHITISEALEAARLDPGLQANTRVLSFGLEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 KTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRHITISEALEAARLDPGLQANTRVLSFGLEA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G47 QQQHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQRLVARVENGDDCSSGSSVTTSNNHSVDESRAQSGSVVEAQMNNNNNNNMNGYACIPGVPWPYTWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 QQQHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQRLVARVENGDDCSSGSSVTTSNNHSVDESRAQSGSVVEAQMNNNNNNNMNGYACIPGVPWPYTWN 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G47 PAMPPPGFYPPPGYPMPFYPYWTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDNETERKQKAGCVLVPKTLRIDDPNEAAKSSIWTTLGIKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_047 PAMPPPGFYPPPGYPMPFYPYWTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDNETERKQKAGCVLVPKTLRIDDPNEAAKSSIWTTLGIKN 310 320 330 340 350 360 370 380 390 400 410 420 430 440 AT3G47 EAMCKAGGMFKGFDHKTKMYNNDKAENSPVLSANPAALSRSHNFHEQI :::::::::::::::::::::::::::::::::::::::::::::::: RE_047 EAMCKAGGMFKGFDHKTKMYNNDKAENSPVLSANPAALSRSHNFHEQI 410 420 430 440

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