| Code name | RE_0481 | |||
|---|---|---|---|---|
| Locus | AT3G61850 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列95.60%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0481_852bp ATGATAAACGTAAAGCCAATGGAGCAAATGATTTCTAGCACCAACAACAACACACCGCAACAACAACCAACATTCATCGCCACCAACACAAGGCCAAACG CCACCGCATCCAATGGTGGCTCCGGAGGAAATACCAACAACACGGCTACGATGGAAACTAGAAAGGCGAGGCCACAAGAGAAAGTAAATTGTCCAAGATG CAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGTCTCACGCAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGC TCTCTTCGTAACGTCCCAGTCGGAGGTAGCTCAAGAAAGAACAAGAGATCCTCTACACCTTTAGCTTCACCTTCTAATCCCAAACTTCCAGATCTAAACC CACCGATTCTTTTCTCAAGCCAAATCCCTAATAAGTCAAATAAAGATCTCAACTTGCTATCTTTCCCGGTCATGCAAGATCATCATCATCATGCTCTTGA GCTTCTAAGATCCAATGGAGTCTCTTCAGGAGGCATGAACACGTTCTTGCCTGGTCAAATGATGGATTCAAACTCAGTCCTGTACTCATCTTTAGGGTTT CCAACAATGCCTGATTACAAACAGAGTAATAACAACCTTTCATTCTCCATTGATCATCATCAAGGGATTGGACATAACACCATCAACAGTAACCAAAGAG CTCAAGATAACAATGATGACATGAATGGAGCAAGTAGGGTTTTGTTCCCTTTTTCAGACATGAAAGAGCTTTCAAGCACAACCCAAGAGAAGAGTCATGG TAATAATACATATTGGAATGGGATGTTCAGTAATACAGGAGGATCTTCATGG >RE_0481_translated MINVKPMEQMISSTNNNTPQQQPTFIATNTRPNATASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGG SLRNVPVGGSSRKNKRSSTPLASPSNPKLPDLNPPILFSSQIPNKSNKDLNLLSFPVMQDHHHHALELLRSNGVSSGGMNTFLPGQMMDSNSVLYSSLGF PTMPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRVLFPFSDMKELSSTTQEKSHGNNTYWNGMFSNTGGSSW |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 851/888 (95.8%)（アミノ酸配列で283/296 (95.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G61 ATGGATGCTACGAAGTGGACTCAGGGTTTTCAAGAAATGATAAACGTAAAGCCAATGGAGCAAATGATTTCTAGCACCAACAACAACACACCGCAACAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_048 ------------------------------------ATGATAAACGTAAAGCCAATGGAGCAAATGATTTCTAGCACCAACAACAACACACCGCAACAAC
10 20 30 40 50 60
110 120 130 140 150 160 170 180 190 200
AT3G61 AACCAACATTCATCGCCACCAACACAAGGCCAAACGCCACCGCATCCAATGGTGGCTCCGGAGGAAATACCAACAACACGGCTACGATGGAAACTAGAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_048 AACCAACATTCATCGCCACCAACACAAGGCCAAACGCCACCGCATCCAATGGTGGCTCCGGAGGAAATACCAACAACACGGCTACGATGGAAACTAGAAA
70 80 90 100 110 120 130 140 150 160
210 220 230 240 250 260 270 280 290 300
AT3G61 GGCGAGGCCACAAGAGAAAGTAAATTGTCCAAGATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGTCTCACGCAACCAAGATACTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_048 GGCGAGGCCACAAGAGAAAGTAAATTGTCCAAGATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGTCTCACGCAACCAAGATACTTC
170 180 190 200 210 220 230 240 250 260
310 320 330 340 350 360 370 380 390 400
AT3G61 TGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCTCTTCGTAACGTCCCAGTCGGAGGTAGCTCAAGAAAGAACAAGAGATCCTCTACACCTTTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_048 TGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCTCTTCGTAACGTCCCAGTCGGAGGTAGCTCAAGAAAGAACAAGAGATCCTCTACACCTTTAG
270 280 290 300 310 320 330 340 350 360
410 420 430 440 450 460 470 480 490 500
AT3G61 CTTCACCTTCTAATCCCAAACTTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAAATCCCTAATAAGTCAAATAAAGATCTCAACTTGCTATCTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_048 CTTCACCTTCTAATCCCAAACTTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAAATCCCTAATAAGTCAAATAAAGATCTCAACTTGCTATCTTT
370 380 390 400 410 420 430 440 450 460
510 520 530 540 550 560 570 580 590 600
AT3G61 CCCGGTCATGCAAGATCATCATCATCATGCTCTTGAGCTTCTAAGATCCAATGGAGTCTCTTCAAGAGGCATGAACACGTTCTTGCCTGGTCAAATGATG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
RE_048 CCCGGTCATGCAAGATCATCATCATCATGCTCTTGAGCTTCTAAGATCCAATGGAGTCTCTTCAGGAGGCATGAACACGTTCTTGCCTGGTCAAATGATG
470 480 490 500 510 520 530 540 550 560
610 620 630 640 650 660 670 680 690 700
AT3G61 GATTCAAACTCAGTCCTGTACTCATCTTTAGGGTTTCCAACAATGCCTGATTACAAACAGAGTAATAACAACCTTTCATTCTCCATTGATCATCATCAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_048 GATTCAAACTCAGTCCTGTACTCATCTTTAGGGTTTCCAACAATGCCTGATTACAAACAGAGTAATAACAACCTTTCATTCTCCATTGATCATCATCAAG
570 580 590 600 610 620 630 640 650 660
710 720 730 740 750 760 770 780 790 800
AT3G61 GGATTGGACATAACACCATCAACAGTAACCAAAGAGCTCAAGATAACAATGATGACATGAATGGAGCAAGTAGGGTTTTGTTCCCTTTTTCAGACATGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_048 GGATTGGACATAACACCATCAACAGTAACCAAAGAGCTCAAGATAACAATGATGACATGAATGGAGCAAGTAGGGTTTTGTTCCCTTTTTCAGACATGAA
670 680 690 700 710 720 730 740 750 760
810 820 830 840 850 860 870 880
AT3G61 AGAGCTTTCAAGCACAACCCAAGAGAAGAGTCATGGTAATAATACATATTGGAATGGGATGTTCAGTAATACAGGAGGATCTTCATGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_048 AGAGCTTTCAAGCACAACCCAAGAGAAGAGTCATGGTAATAATACATATTGGAATGGGATGTTCAGTAATACAGGAGGATCTTCATGG
770 780 790 800 810 820 830 840 850
10 20 30 40 50 60 70 80 90 100
AT3G61 MDATKWTQGFQEMINVKPMEQMISSTNNNTPQQQPTFIATNTRPNATASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_048 ------------MINVKPMEQMISSTNNNTPQQQPTFIATNTRPNATASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYF
10 20 30 40 50 60 70 80
110 120 130 140 150 160 170 180 190 200
AT3G61 CKGCRRYWTEGGSLRNVPVGGSSRKNKRSSTPLASPSNPKLPDLNPPILFSSQIPNKSNKDLNLLSFPVMQDHHHHALELLRSNGVSSRGMNTFLPGQMM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
RE_048 CKGCRRYWTEGGSLRNVPVGGSSRKNKRSSTPLASPSNPKLPDLNPPILFSSQIPNKSNKDLNLLSFPVMQDHHHHALELLRSNGVSSGGMNTFLPGQMM
90 100 110 120 130 140 150 160 170 180
210 220 230 240 250 260 270 280 290
AT3G61 DSNSVLYSSLGFPTMPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRVLFPFSDMKELSSTTQEKSHGNNTYWNGMFSNTGGSSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_048 DSNSVLYSSLGFPTMPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRVLFPFSDMKELSSTTQEKSHGNNTYWNGMFSNTGGSSW
190 200 210 220 230 240 250 260 270 280
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