◆◆◆RE_0488 detail◆◆◆

Code name	RE_0488
Locus	AT5G02460
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0488_1197bp ATGGTTTTTTCTTCATTTCCTACTTATCCTGATCATTCATCAAACTGGCAACAACAACATCAACCAATCACAACCACCGTTGGATTCACGGGAAATAACA TCAACCAACAGTTTCTTCCTCACCATCCCCTCCCACCGCAACAGCAACAAACGCCTCCGCAGCTTCACCACAACAACGGTAACGGCGGAGTCGCTGTTCC CGGTGGACCTGGCGGGTTAATCCGACCAGGTTCGATGGCGGAAAGAGCAAGGCTAGCCAACATACCATTACCTGAAACAGCCTTGAAGTGTCCAAGATGT GACTCAACTAACACCAAATTCTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTCTGCAAAGCATGCCGTCGTTACTGGACACGTGGCGGTG CTCTAAGGAGCGTTCCCGTCGCTGGCGGTTGCCGTAGAAACAAAAGAACCAAAAACAGCGGCGGTGGAGGTGGCGGTAGCACCAGTAGCGGTAACAGCAA GTCACAAGACAGCGCCACGAGCAACGACCAATACCACCACCGAGCCATGGCTAACAATCAGATGGGACCACCTTCTTCGTCATCGTCTCTAAGCTCGTTG CTGTCTTCTTACAACGCAGGGTTAATCCCCGGACATGATCATAACAGCAATAACAACAACATACTTGGACTTGGATCATCTTTGCCTCCTCTTAAGCTTA TGCCTCCTTTAGACTTCACAGACAACTTCACCTTACAATACGGTGCCGTTTCAGCTCCTTCTTATCATATAGGCGGTGGAAGCAGTGGAGGAGCGGCGGC TCTTTTAAACGGTTTTGACCAGTGGAGATTCCCGGCAACAAACCAACTTCCTTTAGGCGGTTTAGACCCGTTTGATCAACAACATCAAATGGAGCAGCAG AATCCAGGTTACGGATTGGTTACCGGGTCGGGTCAGTATCGACCTAAGAACATTTTCCATAACCTTATCTCCTCTTCTTCGTCTGCTTCATCAGCTATGG TTACAGCCACCGCGTCGCAATTAGCTTCAGTGAAAATGGAAGATAGTAACAATCAGCTCAACTTGTCTAGACAACTTTTTGGAGACGAACAACAGCTCTG GAATATTCATGGCGCTGCTGCAGCATCCACCGCAGCTGCAACAAGTTCGTGGAGTGAAGTCTCTAATAATTTCAGTTCTTCTTCTACTAGCAATATA >RE_0488_translated MVFSSFPTYPDHSSNWQQQHQPITTTVGFTGNNINQQFLPHHPLPPQQQQTPPQLHHNNGNGGVAVPGGPGGLIRPGSMAERARLANIPLPETALKCPRC DSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVAGGCRRNKRTKNSGGGGGGSTSSGNSKSQDSATSNDQYHHRAMANNQMGPPSSSSSLSSL LSSYNAGLIPGHDHNSNNNNILGLGSSLPPLKLMPPLDFTDNFTLQYGAVSAPSYHIGGGSSGGAAALLNGFDQWRFPATNQLPLGGLDPFDQQHQMEQQ NPGYGLVTGSGQYRPKNIFHNLISSSSSASSAMVTATASQLASVKMEDSNNQLNLSRQLFGDEQQLWNIHGAAAASTAAATSSWSEVSNNFSSSSTSNI
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1195/1197 (99.8%)（アミノ酸配列で397/399 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G02 ATGGTTTTTTCTTCATTTCCTACTTATCCTGATCATTCATCAAACTGGCAACAACAACATCAACCAATCACAACCACCGTTGGATTCACGGGAAATAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 ATGGTTTTTTCTTCATTTCCTACTTATCCTGATCATTCATCAAACTGGCAACAACAACATCAACCAATCACAACCACCGTTGGATTCACGGGAAATAACA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G02 TCAACCAACAGTTTCTTCCTCACCATCCCCTCCCACCGCAACAGCAACAAACGCCTCCGCAGCTTCACCACAACAACGGTAACGGCGGAGTCGCTGTTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 TCAACCAACAGTTTCTTCCTCACCATCCCCTCCCACCGCAACAGCAACAAACGCCTCCGCAGCTTCACCACAACAACGGTAACGGCGGAGTCGCTGTTCC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G02 CGGTGGACCTGGCGGGTTAATCCGACCAGGTTCGATGGCGGAAAGAGCAAGGCTAGCCAACATACCATTACCTGAAACAGCCTTGAAGTGTCCAAGATGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 CGGTGGACCTGGCGGGTTAATCCGACCAGGTTCGATGGCGGAAAGAGCAAGGCTAGCCAACATACCATTACCTGAAACAGCCTTGAAGTGTCCAAGATGT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G02 GACTCAACTAACACCAAATTCTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTCTGCAAAGCATGCCGTCGTTACTGGACACGTGGCGGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 GACTCAACTAACACCAAATTCTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTCTGCAAAGCATGCCGTCGTTACTGGACACGTGGCGGTG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G02 CTCTAAGGAGCGTTCCCGTCGGTGGCGGTTGCCGTAGAAACAAAAGAACCAAAAACAGCAGCGGTGGAGGTGGCGGTAGCACCAGTAGCGGTAACAGCAA ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: RE_048 CTCTAAGGAGCGTTCCCGTCGCTGGCGGTTGCCGTAGAAACAAAAGAACCAAAAACAGCGGCGGTGGAGGTGGCGGTAGCACCAGTAGCGGTAACAGCAA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G02 GTCACAAGACAGCGCCACGAGCAACGACCAATACCACCACCGAGCCATGGCTAACAATCAGATGGGACCACCTTCTTCGTCATCGTCTCTAAGCTCGTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 GTCACAAGACAGCGCCACGAGCAACGACCAATACCACCACCGAGCCATGGCTAACAATCAGATGGGACCACCTTCTTCGTCATCGTCTCTAAGCTCGTTG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G02 CTGTCTTCTTACAACGCAGGGTTAATCCCCGGACATGATCATAACAGCAATAACAACAACATACTTGGACTTGGATCATCTTTGCCTCCTCTTAAGCTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 CTGTCTTCTTACAACGCAGGGTTAATCCCCGGACATGATCATAACAGCAATAACAACAACATACTTGGACTTGGATCATCTTTGCCTCCTCTTAAGCTTA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G02 TGCCTCCTTTAGACTTCACAGACAACTTCACCTTACAATACGGTGCCGTTTCAGCTCCTTCTTATCATATAGGCGGTGGAAGCAGTGGAGGAGCGGCGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 TGCCTCCTTTAGACTTCACAGACAACTTCACCTTACAATACGGTGCCGTTTCAGCTCCTTCTTATCATATAGGCGGTGGAAGCAGTGGAGGAGCGGCGGC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G02 TCTTTTAAACGGTTTTGACCAGTGGAGATTCCCGGCAACAAACCAACTTCCTTTAGGCGGTTTAGACCCGTTTGATCAACAACATCAAATGGAGCAGCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 TCTTTTAAACGGTTTTGACCAGTGGAGATTCCCGGCAACAAACCAACTTCCTTTAGGCGGTTTAGACCCGTTTGATCAACAACATCAAATGGAGCAGCAG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G02 AATCCAGGTTACGGATTGGTTACCGGGTCGGGTCAGTATCGACCTAAGAACATTTTCCATAACCTTATCTCCTCTTCTTCGTCTGCTTCATCAGCTATGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 AATCCAGGTTACGGATTGGTTACCGGGTCGGGTCAGTATCGACCTAAGAACATTTTCCATAACCTTATCTCCTCTTCTTCGTCTGCTTCATCAGCTATGG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G02 TTACAGCCACCGCGTCGCAATTAGCTTCAGTGAAAATGGAAGATAGTAACAATCAGCTCAACTTGTCTAGACAACTTTTTGGAGACGAACAACAGCTCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 TTACAGCCACCGCGTCGCAATTAGCTTCAGTGAAAATGGAAGATAGTAACAATCAGCTCAACTTGTCTAGACAACTTTTTGGAGACGAACAACAGCTCTG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 AT5G02 GAATATTCATGGCGCTGCTGCAGCATCCACCGCAGCTGCAACAAGTTCGTGGAGTGAAGTCTCTAATAATTTCAGTTCTTCTTCTACTAGCAATATA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 GAATATTCATGGCGCTGCTGCAGCATCCACCGCAGCTGCAACAAGTTCGTGGAGTGAAGTCTCTAATAATTTCAGTTCTTCTTCTACTAGCAATATA 1110 1120 1130 1140 1150 1160 1170 1180 1190 10 20 30 40 50 60 70 80 90 100 AT5G02 MVFSSFPTYPDHSSNWQQQHQPITTTVGFTGNNINQQFLPHHPLPPQQQQTPPQLHHNNGNGGVAVPGGPGGLIRPGSMAERARLANIPLPETALKCPRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 MVFSSFPTYPDHSSNWQQQHQPITTTVGFTGNNINQQFLPHHPLPPQQQQTPPQLHHNNGNGGVAVPGGPGGLIRPGSMAERARLANIPLPETALKCPRC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G02 DSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTKNSSGGGGGSTSSGNSKSQDSATSNDQYHHRAMANNQMGPPSSSSSLSSL :::::::::::::::::::::::::::::::::::::::: :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: RE_048 DSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVAGGCRRNKRTKNSGGGGGGSTSSGNSKSQDSATSNDQYHHRAMANNQMGPPSSSSSLSSL 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G02 LSSYNAGLIPGHDHNSNNNNILGLGSSLPPLKLMPPLDFTDNFTLQYGAVSAPSYHIGGGSSGGAAALLNGFDQWRFPATNQLPLGGLDPFDQQHQMEQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 LSSYNAGLIPGHDHNSNNNNILGLGSSLPPLKLMPPLDFTDNFTLQYGAVSAPSYHIGGGSSGGAAALLNGFDQWRFPATNQLPLGGLDPFDQQHQMEQQ 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 AT5G02 NPGYGLVTGSGQYRPKNIFHNLISSSSSASSAMVTATASQLASVKMEDSNNQLNLSRQLFGDEQQLWNIHGAAAASTAAATSSWSEVSNNFSSSSTSNI ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_048 NPGYGLVTGSGQYRPKNIFHNLISSSSSASSAMVTATASQLASVKMEDSNNQLNLSRQLFGDEQQLWNIHGAAAASTAAATSSWSEVSNNFSSSSTSNI 310 320 330 340 350 360 370 380 390

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