| Code name | RE_04A02 | |||
|---|---|---|---|---|
| Locus | AT2G38090 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.70%一致 | |||
| comment | ||||
| sequence |
>RE_04A02_894bp ATGAACAGAGGAATCGAAGTTATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACCAAATGGACAGCTGAAGAAA ACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGATACTCCCGACAGATGGTCCAGAGTCGCTGCCATGCTTCCCGGTAAAACAGTCGGAGATGT GATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCTGGTCTTATACCAATCCCTGGTTACGCCTCTGGTTCATTCACACTTGATTGG GGTGGCTACGACGGAGCAAGCGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAGGATCCGCCGCACGAACGGCGG AGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAGACAATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGC TCGTAACTTTGTGACCACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATTTCATACGGCAAGTCAATGGTGGCAAAGACAAACGCCGTTCA AGCATCCATGATATCACAACCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACCGCAAACGCACCTTGCTCGCCACCTTCCGTAG GAGGAAACCAGCGGGAGACATCGGAGTGGGAAGGTCAAACACTATACGATGAAACAGCAGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTACT TGGAATGTCTTCGACGCCCTACATGGCAAAACTTCAGGAGCAGAGTTTTCTGAACGCATCGCAATTCGAATCGTACAATGCGTATCTCCAAATG >RE_04A02_translated MNRGIEVMSPATYLETSNWLFQENRGTKWTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTVGDVIKQYRELEEDVSDIEAGLIPIPGYASGSFTLDW GGYDGASGNNGFNMNGYYFSAAGGKRGSAARTAEHERKKGVPWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKYFIRQVNGGKDKRRS SIHDITTVNIPDSPDAAAADNATANAPCSPPSVGGNQRETSEWEGQTLYDETAAAFYNQNAFSETLLGMSSTPYMAKLQEQSFLNASQFESYNAYLQM |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 893/894 (99.9%)（アミノ酸配列で297/298 (99.7%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G38 ATGAACAGAGGAATCGAAGTTATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACCAAATGGACAGCTGAAGAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A ATGAACAGAGGAATCGAAGTTATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACCAAATGGACAGCTGAAGAAA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G38 ACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGATACTCCCGACAGATGGTCCAGAGTCGCTGCCATGCTTCCCGGTAAAACAGTCGGAGATGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A ACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGATACTCCCGACAGATGGTCCAGAGTCGCTGCCATGCTTCCCGGTAAAACAGTCGGAGATGT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT2G38 GATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCTGGTCTTATACCAATCCCTGGTTACGCCTCTGATTCATTCACACTTGATTGG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
RE_04A GATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCTGGTCTTATACCAATCCCTGGTTACGCCTCTGGTTCATTCACACTTGATTGG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT2G38 GGTGGCTACGACGGAGCAAGCGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAGGATCCGCCGCACGAACGGCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GGTGGCTACGACGGAGCAAGCGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAGGATCCGCCGCACGAACGGCGG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT2G38 AGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAGACAATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A AGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAGACAATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT2G38 TCGTAACTTTGTGACCACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATTTCATACGGCAAGTCAATGGTGGCAAAGACAAACGCCGTTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A TCGTAACTTTGTGACCACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATTTCATACGGCAAGTCAATGGTGGCAAAGACAAACGCCGTTCA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT2G38 AGCATCCATGATATCACAACCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACCGCAAACGCACCTTGCTCGCCACCTTCCGTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A AGCATCCATGATATCACAACCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACCGCAAACGCACCTTGCTCGCCACCTTCCGTAG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT2G38 GAGGAAACCAGCGGGAGACATCGGAGTGGGAAGGTCAAACACTATACGATGAAACAGCAGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GAGGAAACCAGCGGGAGACATCGGAGTGGGAAGGTCAAACACTATACGATGAAACAGCAGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTACT
710 720 730 740 750 760 770 780 790 800
810 820 830 840 850 860 870 880 890
AT2G38 TGGAATGTCTTCGACGCCCTACATGGCAAAACTTCAGGAGCAGAGTTTTCTGAACGCATCGCAATTCGAATCGTACAATGCGTATCTCCAAATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A TGGAATGTCTTCGACGCCCTACATGGCAAAACTTCAGGAGCAGAGTTTTCTGAACGCATCGCAATTCGAATCGTACAATGCGTATCTCCAAATG
810 820 830 840 850 860 870 880 890
10 20 30 40 50 60 70 80 90 100
AT2G38 MNRGIEVMSPATYLETSNWLFQENRGTKWTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTVGDVIKQYRELEEDVSDIEAGLIPIPGYASDSFTLDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
RE_04A MNRGIEVMSPATYLETSNWLFQENRGTKWTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTVGDVIKQYRELEEDVSDIEAGLIPIPGYASGSFTLDW
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G38 GGYDGASGNNGFNMNGYYFSAAGGKRGSAARTAEHERKKGVPWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKYFIRQVNGGKDKRRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GGYDGASGNNGFNMNGYYFSAAGGKRGSAARTAEHERKKGVPWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKYFIRQVNGGKDKRRS
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290
AT2G38 SIHDITTVNIPDSPDAAAADNATANAPCSPPSVGGNQRETSEWEGQTLYDETAAAFYNQNAFSETLLGMSSTPYMAKLQEQSFLNASQFESYNAYLQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A SIHDITTVNIPDSPDAAAADNATANAPCSPPSVGGNQRETSEWEGQTLYDETAAAFYNQNAFSETLLGMSSTPYMAKLQEQSFLNASQFESYNAYLQM
210 220 230 240 250 260 270 280 290
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