◆◆◆RE_04A04 detail◆◆◆

Code name	RE_04A04
Locus	AT5G12870
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.60%一致
comment
sequence	>RE_04A04_840bp ATGAGGAAGCCAGAGGTAGCCATTGCAGCTAGTACTCACCAAGTAAAGAAGATGAAGAAGGGACTTTGGTCTCCTGAGGAAGACTCAAAGCTGATGCAAT ACATGTTAAGCAATGGACAAGGATGTTGGAGTGATGTTGCGAAAAACGCAGGACTTCAAAGATGTGGCAAAAGCTGCCGTCTTCGTTGGATCAACTATCT TCGTCCTGACCTCAAGCGTGGCGCTTTCTCTCCTCAAGAAGAGGATCTCATCATTCGCTTTCATTCCATCCTCGGCAACAGGTGGTCTCGGATTGCAGCA CGATTGCCTGGTCGGACCGATAACGAGATCAAGAATTTCTGGAACTCAACAATAAAGAAAAGGCTAAAGAAGATGTCCGATACCTCCAACTTAATCAACA ACTCATCCTCATCACCCAACACAGCAAGCGATTCCTCTTCTAATTCCGCATCTTCTTTGGATATTAAAGACATTATAGGAAGCTTCATGTCCTTACAAGA ACAAGGCTTCGTCAACCCTTCCTTGACCCACATACAAACCAACAATCCATTTCCAACGGGAAACATGATCAGCCACCCGTGCAATGACGATTTTACCCCT TATGTAGATGGTATCTATGGAGTAAACGCAGGGGTACAAGGGGAACTCTACTTCCCACCTTTGGAATGTGAAGAAGGTGATTGGTACAATGCAAATATAA ACAACCACTTAGACGAGTTGAACACTAATGGATCCGGAAACGCACCTGAGGGTATGAGACCAGTGGAAGAATTTTGGGACCTTGACCAGTTGATGAACAC TGAGGTTCCTTCGTTTTACTTCAACTTCAAACAAAGCATA >RE_04A04_translated MRKPEVAIAASTHQVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSRIAA RLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLINNSSSSPNTASDSSSNSASSLDIKDIIGSFMSLQEQGFVNPSLTHIQTNNPFPTGNMISHPCNDDFTP YVDGIYGVNAGVQGELYFPPLECEEGDWYNANINNHLDELNTNGSGNAPEGMRPVEEFWDLDQLMNTEVPSFYFNFKQSI
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 839/840 (99.9%)（アミノ酸配列で279/280 (99.6%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G12 ATGAGGAAGCCAGAGGTAGCCATTGCAGCTAGTACTCACCAAGTAAAGAAGATGAAGAAGGGACTTTGGTCTCCTGAGGAAGACTCAAAGCTGATGCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_04A ATGAGGAAGCCAGAGGTAGCCATTGCAGCTAGTACTCACCAAGTAAAGAAGATGAAGAAGGGACTTTGGTCTCCTGAGGAAGACTCAAAGCTGATGCAAT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G12 ACATGTTAAGCAATGGACAAGGATGTTGGAGTGATGTTGCGAAAAACGCAGGACTTCAAAGATGTGGCAAAAGCTGCCGTCTTCGTTGGATCAACTATCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_04A ACATGTTAAGCAATGGACAAGGATGTTGGAGTGATGTTGCGAAAAACGCAGGACTTCAAAGATGTGGCAAAAGCTGCCGTCTTCGTTGGATCAACTATCT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G12 TCGTCCTGACCTCAAGCGTGGCGCTTTCTCTCCTCAAGAAGAGGATCTCATCATTCGCTTTCATTCCATCCTCGGCAACAGGTGGTCTCAGATTGCAGCA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: RE_04A TCGTCCTGACCTCAAGCGTGGCGCTTTCTCTCCTCAAGAAGAGGATCTCATCATTCGCTTTCATTCCATCCTCGGCAACAGGTGGTCTCGGATTGCAGCA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G12 CGATTGCCTGGTCGGACCGATAACGAGATCAAGAATTTCTGGAACTCAACAATAAAGAAAAGGCTAAAGAAGATGTCCGATACCTCCAACTTAATCAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_04A CGATTGCCTGGTCGGACCGATAACGAGATCAAGAATTTCTGGAACTCAACAATAAAGAAAAGGCTAAAGAAGATGTCCGATACCTCCAACTTAATCAACA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G12 ACTCATCCTCATCACCCAACACAGCAAGCGATTCCTCTTCTAATTCCGCATCTTCTTTGGATATTAAAGACATTATAGGAAGCTTCATGTCCTTACAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_04A ACTCATCCTCATCACCCAACACAGCAAGCGATTCCTCTTCTAATTCCGCATCTTCTTTGGATATTAAAGACATTATAGGAAGCTTCATGTCCTTACAAGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G12 ACAAGGCTTCGTCAACCCTTCCTTGACCCACATACAAACCAACAATCCATTTCCAACGGGAAACATGATCAGCCACCCGTGCAATGACGATTTTACCCCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_04A ACAAGGCTTCGTCAACCCTTCCTTGACCCACATACAAACCAACAATCCATTTCCAACGGGAAACATGATCAGCCACCCGTGCAATGACGATTTTACCCCT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G12 TATGTAGATGGTATCTATGGAGTAAACGCAGGGGTACAAGGGGAACTCTACTTCCCACCTTTGGAATGTGAAGAAGGTGATTGGTACAATGCAAATATAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_04A TATGTAGATGGTATCTATGGAGTAAACGCAGGGGTACAAGGGGAACTCTACTTCCCACCTTTGGAATGTGAAGAAGGTGATTGGTACAATGCAAATATAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G12 ACAACCACTTAGACGAGTTGAACACTAATGGATCCGGAAACGCACCTGAGGGTATGAGACCAGTGGAAGAATTTTGGGACCTTGACCAGTTGATGAACAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_04A ACAACCACTTAGACGAGTTGAACACTAATGGATCCGGAAACGCACCTGAGGGTATGAGACCAGTGGAAGAATTTTGGGACCTTGACCAGTTGATGAACAC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 AT5G12 TGAGGTTCCTTCGTTTTACTTCAACTTCAAACAAAGCATA :::::::::::::::::::::::::::::::::::::::: RE_04A TGAGGTTCCTTCGTTTTACTTCAACTTCAAACAAAGCATA 810 820 830 840 10 20 30 40 50 60 70 80 90 100 AT5G12 MRKPEVAIAASTHQVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: RE_04A MRKPEVAIAASTHQVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSRIAA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G12 RLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLINNSSSSPNTASDSSSNSASSLDIKDIIGSFMSLQEQGFVNPSLTHIQTNNPFPTGNMISHPCNDDFTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_04A RLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLINNSSSSPNTASDSSSNSASSLDIKDIIGSFMSLQEQGFVNPSLTHIQTNNPFPTGNMISHPCNDDFTP 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 AT5G12 YVDGIYGVNAGVQGELYFPPLECEEGDWYNANINNHLDELNTNGSGNAPEGMRPVEEFWDLDQLMNTEVPSFYFNFKQSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_04A YVDGIYGVNAGVQGELYFPPLECEEGDWYNANINNHLDELNTNGSGNAPEGMRPVEEFWDLDQLMNTEVPSFYFNFKQSI 210 220 230 240 250 260 270 280

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