| Code name | RE_04A05 | |||
|---|---|---|---|---|
| Locus | AT1G25470 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.70%一致 | |||
| comment | AT1G25470.2(=.1)_by_RIKE読まれた配列に有N | |||
| sequence |
>RE_04A05_861bp ATGAAGTCCTTTGTGAAACCTGAGAGAGACTCTTTGTTGAGAACAGTTCGTATTGTTTTCACTGATCCTGATGCTACTGATGATTCCTCTTCCTCTAGCG ATGAATGGTTACCTAAACCTCGAAAGGTAAAGCGTTTTGTTCATGAGATTACTTTCCTCCCTCAGGTCTCCGAGAGTTCTCAGGATCGTAGCAATGCTGT CAAAACCCCTAGAAGGAAATCTACTAGGCAGTTTAAGTATCCTGTGGGAGTTAGGCCGAGGCCATCAGGCAAATTTGCTGCTGAGATTTTGAACCCATTC ACTAAAACTAAGAAATGGTTGGGTACTTATGAAACTCCTGCAGAAGCTGAGAAGGCTTATGTTGACAAGAAGGTTGAGTATGATGCACTGGCTTCTTCAG GTTCTGCTGTTTCCTCATCGGTTGTAACAGTGACTAGCCAGTGCTTGCGTTCCCCTACTTCTGCTTCTGTTTCTTGTGTAAGTGCTGATGATTTGTCTAA AGAAAAGACGTCTCTGAACAAAGATGTTGCTGCGTCTGGTGATTCAACCACCAAAGAAGTGTTCACTACCTTCGACTTTTCGGATGTGAAAATACCTGAT CTGAGATTCTTAGCAGCAGAAGAGGATTCTATGGTTTCTAATGCAAATGGTGCAGAGCTAGACTTTGATTGTTTCCTTACTGACTCTAACATTCTGCTGG ATGATTACTCATTGCTCGAAAATGGTATCAACTTCAGCAGGTTTGAAAACAGTCTTCCAAGTGAGCTACCTGACTGTGATTTCACTGAAATGGAATTCCA GCTTGATGATTTCAAATTTGCCTATACAGATCATCTGACAACACCGCCTCTCGGTTTGGTT >RE_04A05_translated MKSFVKPERDSLLRTVRIVFTDPDATDDSSSSSDEWLPKPRKVKRFVHEITFLPQVSESSQDRSNAVKTPRRKSTRQFKYPVGVRPRPSGKFAAEILNPF TKTKKWLGTYETPAEAEKAYVDKKVEYDALASSGSAVSSSVVTVTSQCLRSPTSASVSCVSADDLSKEKTSLNKDVAASGDSTTKEVFTTFDFSDVKIPD LRFLAAEEDSMVSNANGAELDFDCFLTDSNILLDDYSLLENGINFSRFENSLPSELPDCDFTEMEFQLDDFKFAYTDHLTTPPLGLV |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 859/861 (99.8%)（アミノ酸配列で286/287 (99.7%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G25 ATGAAGTCCTTTGTGAAACCTGAGAGAGACTCTTTGTTGAGAACAGTTCGTATTGTTTTCACTGATCCTGATGCTACTGATGATTCCTCTTCCTCTAGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A ATGAAGTCCTTTGTGAAACCTGAGAGAGACTCTTTGTTGAGAACAGTTCGTATTGTTTTCACTGATCCTGATGCTACTGATGATTCCTCTTCCTCTAGCG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G25 ATGAATGGTTACCTAAACCTCGAAAGGTAAAGCGTTTTGTTCATGAGATTACTTTCCTCCCTCAGGTCTCCGAGAGTTCTCAGGATCGTAGCAATGCTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A ATGAATGGTTACCTAAACCTCGAAAGGTAAAGCGTTTTGTTCATGAGATTACTTTCCTCCCTCAGGTCTCCGAGAGTTCTCAGGATCGTAGCAATGCTGT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G25 CAAAACCCCTAGAAGGAAATCTACTAGGCAGTTTAAGTATCCTGTGGGAGTTAGGCCGAGGCCATCAGGCAAATTTGCTGCTGAGATTTTGAACCCATTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A CAAAACCCCTAGAAGGAAATCTACTAGGCAGTTTAAGTATCCTGTGGGAGTTAGGCCGAGGCCATCAGGCAAATTTGCTGCTGAGATTTTGAACCCATTC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G25 ACTAAAACTAAGAAATGGTTGGGTACTTATGAAACTCCTGCAGAAGCTGAGAAGGCTTATGTTGACAAGAAGGTTGAGTATGATGCACTGGCTTCTTCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A ACTAAAACTAAGAAATGGTTGGGTACTTATGAAACTCCTGCAGAAGCTGAGAAGGCTTATGTTGACAAGAAGGTTGAGTATGATGCACTGGCTTCTTCAG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G25 GTTCTGCTGTTTCCTCATCGGTTGTAACAGTGACTAGCCAGTGCTTGCGTTCCCCTACTTCTGCTTCTGTTTCTTGTGTAAGTGCTGATGATTTGTCTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GTTCTGCTGTTTCCTCATCGGTTGTAACAGTGACTAGCCAGTGCTTGCGTTCCCCTACTTCTGCTTCTGTTTCTTGTGTAAGTGCTGATGATTTGTCTAA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G25 AGAAAAGACGTCTCTGAACAAAGATGTTGCTGCGTCTGGTGATTCAACCACCAAAGAAGTGTTCACTACTTTCGACTTTTCGGATGTGAAAATACCTGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
RE_04A AGAAAAGACGTCTCTGAACAAAGATGTTGCTGCGTCTGGTGATTCAACCACCAAAGAAGTGTTCACTACCTTCGACTTTTCGGATGTGAAAATACCTGAT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT1G25 CTGAGATTCTTAGCAGCAGAAGAGGATTCTATGGTTTCTAATGCAAATGGTGCAGAGCTAGACTTTGATTGTTTCCTTACTGACTCTAACATTCTGCTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A CTGAGATTCTTAGCAGCAGAAGAGGATTCTATGGTTTCTAATGCAAATGGTGCAGAGCTAGACTTTGATTGTTTCCTTACTGACTCTAACATTCTGCTGG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT1G25 ATGATTACTCATTGCTCGAAAATGATATCAACTTCAGCAGGTTTGAAAACAGTCTTCCAAGTGAGCTACCTGACTGTGATTTCACTGAAATGGAATTCCA
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A ATGATTACTCATTGCTCGAAAATGGTATCAACTTCAGCAGGTTTGAAAACAGTCTTCCAAGTGAGCTACCTGACTGTGATTTCACTGAAATGGAATTCCA
710 720 730 740 750 760 770 780 790 800
810 820 830 840 850 860
AT1G25 GCTTGATGATTTCAAATTTGCCTATACAGATCATCTGACAACACCGCCTCTCGGTTTGGTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GCTTGATGATTTCAAATTTGCCTATACAGATCATCTGACAACACCGCCTCTCGGTTTGGTT
810 820 830 840 850 860
10 20 30 40 50 60 70 80 90 100
AT1G25 MKSFVKPERDSLLRTVRIVFTDPDATDDSSSSSDEWLPKPRKVKRFVHEITFLPQVSESSQDRSNAVKTPRRKSTRQFKYPVGVRPRPSGKFAAEILNPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A MKSFVKPERDSLLRTVRIVFTDPDATDDSSSSSDEWLPKPRKVKRFVHEITFLPQVSESSQDRSNAVKTPRRKSTRQFKYPVGVRPRPSGKFAAEILNPF
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G25 TKTKKWLGTYETPAEAEKAYVDKKVEYDALASSGSAVSSSVVTVTSQCLRSPTSASVSCVSADDLSKEKTSLNKDVAASGDSTTKEVFTTFDFSDVKIPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A TKTKKWLGTYETPAEAEKAYVDKKVEYDALASSGSAVSSSVVTVTSQCLRSPTSASVSCVSADDLSKEKTSLNKDVAASGDSTTKEVFTTFDFSDVKIPD
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280
AT1G25 LRFLAAEEDSMVSNANGAELDFDCFLTDSNILLDDYSLLENDINFSRFENSLPSELPDCDFTEMEFQLDDFKFAYTDHLTTPPLGLV
::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
RE_04A LRFLAAEEDSMVSNANGAELDFDCFLTDSNILLDDYSLLENGINFSRFENSLPSELPDCDFTEMEFQLDDFKFAYTDHLTTPPLGLV
210 220 230 240 250 260 270 280
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