| Code name | RE_04A06 | |||
|---|---|---|---|---|
| Locus | AT1G28370 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.40%一致 | |||
| comment | ||||
| sequence |
>RE_04A06_498bp ATGGCACCGACAGTTAAAACGGCGGCCGTCAAAACCAACGAAGGTAACGGAGTCCGTTACAGAGGAGTGAGGAAGAGACCATGGGGACGTTACGCAGCCG AGATCAGAGATCCTCTCAAGAAGTCACGTGTCTGGCTCGGTACTTTCGACACTCCTGAAGAAGCCGCTCGTGCCTACGACAAACGTGCTATTGAGTTTCG TGGAGCTAAAGCCAAAACCAACTTCCCTTGTTACAACATCAACGCCCACTGCTTGAGTTTGACACAGAGCCTGAGCCAGAGCAGCACCGTGGAATCATCG TTTCCTAATCTCAACCTCGGATCTGACTCTGTTAGTTCGAGATTCCCTTTTCCTAAGATTCAGGTTAAGGCTGGGATGATGGTGTTCGATGAAAGGAGTG AATCGGATTCTTCGTCGGTGGTGATGGATGTCGTTAGATATGAAGGACGACGTGTGGTTTTGGACTTGGATCTTAATTTCCCTCCTCCACCTGAGAAC >RE_04A06_translated MAPTVKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPLKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYNINAHCLSLTQSLSQSSTVESS FPNLNLGSDSVSSRFPFPKIQVKAGMMVFDERSESDSSSVVMDVVRYEGRRVVLDLDLNFPPPPEN |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 497/498 (99.8%)（アミノ酸配列で165/166 (99.4%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G28 ATGGCACCGACAGTTAAAACGGCGGCCGTCAAAACCAACGAAGGTAACGGAGTCCGTTACAGAGGAGTGAGGAAGAGACCATGGGGACGTTACGCAGCCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A ATGGCACCGACAGTTAAAACGGCGGCCGTCAAAACCAACGAAGGTAACGGAGTCCGTTACAGAGGAGTGAGGAAGAGACCATGGGGACGTTACGCAGCCG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G28 AGATCAGAGATCCTTTCAAGAAGTCACGTGTCTGGCTCGGTACTTTCGACACTCCTGAAGAAGCCGCTCGTGCCTACGACAAACGTGCTATTGAGTTTCG
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A AGATCAGAGATCCTCTCAAGAAGTCACGTGTCTGGCTCGGTACTTTCGACACTCCTGAAGAAGCCGCTCGTGCCTACGACAAACGTGCTATTGAGTTTCG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G28 TGGAGCTAAAGCCAAAACCAACTTCCCTTGTTACAACATCAACGCCCACTGCTTGAGTTTGACACAGAGCCTGAGCCAGAGCAGCACCGTGGAATCATCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A TGGAGCTAAAGCCAAAACCAACTTCCCTTGTTACAACATCAACGCCCACTGCTTGAGTTTGACACAGAGCCTGAGCCAGAGCAGCACCGTGGAATCATCG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G28 TTTCCTAATCTCAACCTCGGATCTGACTCTGTTAGTTCGAGATTCCCTTTTCCTAAGATTCAGGTTAAGGCTGGGATGATGGTGTTCGATGAAAGGAGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A TTTCCTAATCTCAACCTCGGATCTGACTCTGTTAGTTCGAGATTCCCTTTTCCTAAGATTCAGGTTAAGGCTGGGATGATGGTGTTCGATGAAAGGAGTG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490
AT1G28 AATCGGATTCTTCGTCGGTGGTGATGGATGTCGTTAGATATGAAGGACGACGTGTGGTTTTGGACTTGGATCTTAATTTCCCTCCTCCACCTGAGAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A AATCGGATTCTTCGTCGGTGGTGATGGATGTCGTTAGATATGAAGGACGACGTGTGGTTTTGGACTTGGATCTTAATTTCCCTCCTCCACCTGAGAAC
410 420 430 440 450 460 470 480 490
10 20 30 40 50 60 70 80 90 100
AT1G28 MAPTVKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYNINAHCLSLTQSLSQSSTVESS
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A MAPTVKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPLKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYNINAHCLSLTQSLSQSSTVESS
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160
AT1G28 FPNLNLGSDSVSSRFPFPKIQVKAGMMVFDERSESDSSSVVMDVVRYEGRRVVLDLDLNFPPPPEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A FPNLNLGSDSVSSRFPFPKIQVKAGMMVFDERSESDSSSVVMDVVRYEGRRVVLDLDLNFPPPPEN
110 120 130 140 150 160
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