| Code name | RE_04A10 | |||
|---|---|---|---|---|
| Locus | AT1G71450 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
| comment | ||||
| sequence |
>RE_04A10_549bp ATGGCTGGTCTTAGGAATTCCGGTAACAGCGACAAAGCGCAAAACGATGGCAAAGGTGTACCATCTGCCTACAGAGGAGTCCGGAAGAGAAAATGGGGGA AATGGGTGTCTGAAATCCGTGAACCGGGGACCAAGAACCGTATCTGGCTAGGCAGTTTCGAGACTCCTGAAAGGGCTGCAACCGCATACGACGTGGCAGC ATTTCATTTCAGAGGGAGAGAAGCTCGTCTCAACTTCCCTGAGCTCGCCAGCAGCCTTCCACGTCCTGCAGACTCTAGCTCAGACAGCATTCGCATGGCA GTTCATGAGGCAACACTCTGCCGCACCACCGAAGGAACAGAGTCAGCCATGCAAGTGGACAGCTCAAGCTCCTCCAATGTAGCTCCAACAATGGTCAGAC TCTCGCCCAGGGAAATTCAAGCGATCAACGAGTCAACTTTGGGATCTCCTACTACAATGATGCATTCAACATACGACCCTATGGAGTTTGCTAATGATGT GGAGATGAATGCTTGGGAAACATACCAGAGTGACTTTCTTTGGGACCCT >RE_04A10_translated MAGLRNSGNSDKAQNDGKGVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPERAATAYDVAAFHFRGREARLNFPELASSLPRPADSSSDSIRMA VHEATLCRTTEGTESAMQVDSSSSSNVAPTMVRLSPREIQAINESTLGSPTTMMHSTYDPMEFANDVEMNAWETYQSDFLWDP |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 548/549 (99.8%)（アミノ酸配列で182/183 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G71 ATGGCTGGTCTTAGGAATTCCGGTAACAGCGACAAAGCGCAAAACGATGGCAAAGGTGTACCATCTGCCTACAGAGGAGTCCGGAAGAGAAAATGGGGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A ATGGCTGGTCTTAGGAATTCCGGTAACAGCGACAAAGCGCAAAACGATGGCAAAGGTGTACCATCTGCCTACAGAGGAGTCCGGAAGAGAAAATGGGGGA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G71 AATGGGTGTCTGAAATCCGTGAACCGGGGACCAAGAACCGTATCTGGCTAGGCAGTTTCGAGACTCCTGAAATGGCTGCAACCGCATACGACGTGGCAGC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
RE_04A AATGGGTGTCTGAAATCCGTGAACCGGGGACCAAGAACCGTATCTGGCTAGGCAGTTTCGAGACTCCTGAAAGGGCTGCAACCGCATACGACGTGGCAGC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G71 ATTTCATTTCAGAGGGAGAGAAGCTCGTCTCAACTTCCCTGAGCTCGCCAGCAGCCTTCCACGTCCTGCAGACTCTAGCTCAGACAGCATTCGCATGGCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A ATTTCATTTCAGAGGGAGAGAAGCTCGTCTCAACTTCCCTGAGCTCGCCAGCAGCCTTCCACGTCCTGCAGACTCTAGCTCAGACAGCATTCGCATGGCA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G71 GTTCATGAGGCAACACTCTGCCGCACCACCGAAGGAACAGAGTCAGCCATGCAAGTGGACAGCTCAAGCTCCTCCAATGTAGCTCCAACAATGGTCAGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GTTCATGAGGCAACACTCTGCCGCACCACCGAAGGAACAGAGTCAGCCATGCAAGTGGACAGCTCAAGCTCCTCCAATGTAGCTCCAACAATGGTCAGAC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G71 TCTCGCCCAGGGAAATTCAAGCGATCAACGAGTCAACTTTGGGATCTCCTACTACAATGATGCATTCAACATACGACCCTATGGAGTTTGCTAATGATGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A TCTCGCCCAGGGAAATTCAAGCGATCAACGAGTCAACTTTGGGATCTCCTACTACAATGATGCATTCAACATACGACCCTATGGAGTTTGCTAATGATGT
410 420 430 440 450 460 470 480 490 500
510 520 530 540
AT1G71 GGAGATGAATGCTTGGGAAACATACCAGAGTGACTTTCTTTGGGACCCT
:::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GGAGATGAATGCTTGGGAAACATACCAGAGTGACTTTCTTTGGGACCCT
510 520 530 540
10 20 30 40 50 60 70 80 90 100
AT1G71 MAGLRNSGNSDKAQNDGKGVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASSLPRPADSSSDSIRMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
RE_04A MAGLRNSGNSDKAQNDGKGVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPERAATAYDVAAFHFRGREARLNFPELASSLPRPADSSSDSIRMA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180
AT1G71 VHEATLCRTTEGTESAMQVDSSSSSNVAPTMVRLSPREIQAINESTLGSPTTMMHSTYDPMEFANDVEMNAWETYQSDFLWDP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A VHEATLCRTTEGTESAMQVDSSSSSNVAPTMVRLSPREIQAINESTLGSPTTMMHSTYDPMEFANDVEMNAWETYQSDFLWDP
110 120 130 140 150 160 170 180
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