| Code name | RE_04A11 | |||
|---|---|---|---|---|
| Locus | AT3G15210 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
| comment | ||||
| sequence |
>RE_04A11_666bp ATGGCCAAGATGGGCTTGAAACCCGACCCGGCTACTACTAACCAGACCCACAATAATGCCAAGGAGATTCGTTACAGAGGCGTTAGGAAGCGTCCTTGGG GCCGTTATGCCGCCGAGATCCGAGATCCGGGCAAGAAAACCCGCGTCTGGCTTGGCACTTTCGATACGGCTGAAGAGGCGGCGCGTGCTTACGATACGGC GGCGCGTGATTTTCGTGGTGCTAAGGCTAAGACCAATTTCCCAACTTTTCTCGAGCTGAGTGACCAGAAGGTCCCTACCGGTTTCGCGCGTAGCCCTAGC CAGAGCAGCACGCTCGACTGTGCTTCTCCTCCGACGTTAGTTGTGCCTTCAGCGACGGCTGGGAATGTTCCCCCGCAGCTCGAGCTTAGTCTCGGCGGAG GAGGCGGCGGCTCGTGTTATCAGATCCCGATGTCGCGTCCTGTCTACTTTTTGGACCTGATGGGGATCGGTAACTTAGGTCGTGGTCAGCCTCCTCCTGT GACATCGGCGTTTAGATCGCCGGTGGTGCATGTTGCGACGAAGATGGCTTGTGGTGCCCAAAGCGACTCTGATTCGTCATCGGTCGTTGATTTCGAAGGT GGGATGGAGAAGAGATCTCAGCTGTTAGATCTAGATCTTAATTTGCCTCCTCCATCGGAACAGGCC >RE_04A11_translated MAKMGLKPDPATTNQTHNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSDQKVPTGFARSPS QSSTLDCASPPTLVVPSATAGNVPPQLELSLGGGGGGSCYQIPMSRPVYFLDLMGIGNLGRGQPPPVTSAFRSPVVHVATKMACGAQSDSDSSSVVDFEG GMEKRSQLLDLDLNLPPPSEQA |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 665/666 (99.8%)（アミノ酸配列で221/222 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G15 ATGGCCAAGATGGGCTTGAAACCCGACCCGGCTACTACTAACCAGACCCACAATAATGCCAAGGAGATTCGTTACAGAGGCGTTAGGAAGCGTCCTTGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A ATGGCCAAGATGGGCTTGAAACCCGACCCGGCTACTACTAACCAGACCCACAATAATGCCAAGGAGATTCGTTACAGAGGCGTTAGGAAGCGTCCTTGGG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G15 GCCGTTATGCCGCCGAGATCCGAGATCCGGGCAAGAAAACCCGCGTCTGGCTTGGCACTTTCGATACGGCTGAAGAGGCGGCGCGTGCTTACGATACGGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GCCGTTATGCCGCCGAGATCCGAGATCCGGGCAAGAAAACCCGCGTCTGGCTTGGCACTTTCGATACGGCTGAAGAGGCGGCGCGTGCTTACGATACGGC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G15 GGCGCGTGATTTTCGTGGTGCTAAGGCTAAGACCAATTTCCCAACTTTTCTCGAGCTGAGTGACCAGAAGGTCCCTACCGGTTTCGCGCGTAGCCCTAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GGCGCGTGATTTTCGTGGTGCTAAGGCTAAGACCAATTTCCCAACTTTTCTCGAGCTGAGTGACCAGAAGGTCCCTACCGGTTTCGCGCGTAGCCCTAGC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G15 CAGAGCAGCACGCTCGACTGTGCTTCTCCTCCGACGTTAGTTGTGCCTTCAGCGACGGCTGGGAATGTTCCCCCGCAGCTCGAGCTTAGTCTCGGCGGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A CAGAGCAGCACGCTCGACTGTGCTTCTCCTCCGACGTTAGTTGTGCCTTCAGCGACGGCTGGGAATGTTCCCCCGCAGCTCGAGCTTAGTCTCGGCGGAG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G15 GAGGCGGCGGCTCGTGTTATCAGATCCCGATGTCGCGTCCTGTCTACTTTTTGGACCTGATGGGGATCGGTAACGTAGGTCGTGGTCAGCCTCCTCCTGT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
RE_04A GAGGCGGCGGCTCGTGTTATCAGATCCCGATGTCGCGTCCTGTCTACTTTTTGGACCTGATGGGGATCGGTAACTTAGGTCGTGGTCAGCCTCCTCCTGT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G15 GACATCGGCGTTTAGATCGCCGGTGGTGCATGTTGCGACGAAGATGGCTTGTGGTGCCCAAAGCGACTCTGATTCGTCATCGGTCGTTGATTTCGAAGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GACATCGGCGTTTAGATCGCCGGTGGTGCATGTTGCGACGAAGATGGCTTGTGGTGCCCAAAGCGACTCTGATTCGTCATCGGTCGTTGATTTCGAAGGT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660
AT3G15 GGGATGGAGAAGAGATCTCAGCTGTTAGATCTAGATCTTAATTTGCCTCCTCCATCGGAACAGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A GGGATGGAGAAGAGATCTCAGCTGTTAGATCTAGATCTTAATTTGCCTCCTCCATCGGAACAGGCC
610 620 630 640 650 660
10 20 30 40 50 60 70 80 90 100
AT3G15 MAKMGLKPDPATTNQTHNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSDQKVPTGFARSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04A MAKMGLKPDPATTNQTHNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSDQKVPTGFARSPS
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G15 QSSTLDCASPPTLVVPSATAGNVPPQLELSLGGGGGGSCYQIPMSRPVYFLDLMGIGNVGRGQPPPVTSAFRSPVVHVATKMACGAQSDSDSSSVVDFEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
RE_04A QSSTLDCASPPTLVVPSATAGNVPPQLELSLGGGGGGSCYQIPMSRPVYFLDLMGIGNLGRGQPPPVTSAFRSPVVHVATKMACGAQSDSDSSSVVDFEG
110 120 130 140 150 160 170 180 190 200
210 220
AT3G15 GMEKRSQLLDLDLNLPPPSEQA
::::::::::::::::::::::
RE_04A GMEKRSQLLDLDLNLPPPSEQA
210 220
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