| Code name | RE_04B01 | |||
|---|---|---|---|---|
| Locus | AT4G17490 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.30%一致 | |||
| comment | ->RE_0101(0314_塩基配列100%一致/0420_塩基配列100%一致) | |||
| sequence |
>RE_04B01_846bp ATGGCTACACCAAACGAAGTATCAGCTCTTTTCCTCATCAAGAAGTATCTCCTCGACGAATTGTCTCCGTTGCCTACTACTGCCACCACCAATCGATGGA TGAACGATTTCACGTCATTTGATCAAACCGGTTTCGAGTTTTCTGAATTTGAAACCAAACCGGAAATAATCGATCTCGTCACTCCCAAACCGGAGATTTT TGATTTCGATGTGAAATCTGAAATTCCATCTGAATCGAACGATTCCTTCACGTTCCAATCGAATCCTCCTCGCGTTACTGTTCAATCCAATCGAAAACCG CCGTTGAAGATCGCACCACCGAACCGAACCAAGTGGATTCAATTCGCAACCGGAAATCCTAAACCGGAACTTCCCGTACCGGTTGTAGCAGCAGAGGAGA AGGGGCATTACAGAGGAGTGAGGATGAGGCCGTGGGGGAAATTCGCGGCGGAGATTCGAGACCCGACTCGTCGTGGAACTCGTGTTTGGCTCGGGACGTT TGAGACGGCGATCGAAGCGGCTAGAGCTTACGACAAAGAAGCGTTTAGACTACGAGGATCAAAGGCGATTCTGAATTTCCCGCTTGAAGTTGACAAGTGG AGTCCACGCGCTGAAGATGGTCGTGGCCTGTACAACAAACGGAAGAGAGACGGCGAGGAGGAGGAAGTGACGGTGGTTGAGAAAGTGCTAAAGACGGAGG AGAGTTACGACGTTAGCGGCGGCGAGAATGTTGAGTCAGGTTTGACGGCGATAGATGACTGGGATTTGACGGAGTTTCTGAGCATGCCGCTTTTATCGCC GTTATCTCCACACCCACCGTTTGGTTATCCACAATTGACCGTTGTT >RE_04B01_translated MATPNEVSALFLIKKYLLDELSPLPTTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKPEIFDFDVKSEIPSESNDSFTFQSNPPRVTVQSNRKP PLKIAPPNRTKWIQFATGNPKPELPVPVVAAEEKGHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKW SPRAEDGRGLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGENVESGLTAIDDWDLTEFLSMPLLSPLSPHPPFGYPQLTVV |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 844/846 (99.8%)（アミノ酸配列で280/282 (99.3%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G17 ATGGCTACACCAAACGAAGTATCAGCTCTTTTCCTCATCAAGAAGTATCTCCTCGACGAATTGTCTCCGTTGCCTACTACTGCCACCACCAATCGATGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B ATGGCTACACCAAACGAAGTATCAGCTCTTTTCCTCATCAAGAAGTATCTCCTCGACGAATTGTCTCCGTTGCCTACTACTGCCACCACCAATCGATGGA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G17 TGAACGATTTCACGTCATTTGATCAAACCGGTTTCGAGTTTTCTGAATTTGAAACCAAACCGGAAATAATCGATCTCGTCACTCCCAAACCGGAGATTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B TGAACGATTTCACGTCATTTGATCAAACCGGTTTCGAGTTTTCTGAATTTGAAACCAAACCGGAAATAATCGATCTCGTCACTCCCAAACCGGAGATTTT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G17 TGATTTCGATGTGAAATCTGAAATTCCATCTGAATCGAACGATTCCTTCACGTTCCAATCGAATCCTCCTCGCGTTACTGTTCAATCCAATCGAAAACCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B TGATTTCGATGTGAAATCTGAAATTCCATCTGAATCGAACGATTCCTTCACGTTCCAATCGAATCCTCCTCGCGTTACTGTTCAATCCAATCGAAAACCG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G17 CCGTTGAAGATCGCACCACCGAACCGAACCAAGTGGATTCAATTCGCAACCGGAAATCCTAAACCGGAACTTCCCGTACCGGTTGTAGCAGCAGAGGAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B CCGTTGAAGATCGCACCACCGAACCGAACCAAGTGGATTCAATTCGCAACCGGAAATCCTAAACCGGAACTTCCCGTACCGGTTGTAGCAGCAGAGGAGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G17 AGAGGCATTACAGAGGAGTGAGGATGAGGCCGTGGGGGAAATTCGCGGCGGAGATTCGAGACCCGACTCGTCGTGGAACTCGTGTTTGGCTCGGGACGTT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B AGGGGCATTACAGAGGAGTGAGGATGAGGCCGTGGGGGAAATTCGCGGCGGAGATTCGAGACCCGACTCGTCGTGGAACTCGTGTTTGGCTCGGGACGTT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G17 TGAGACGGCGATCGAAGCGGCTAGAGCTTACGACAAAGAAGCGTTTAGACTACGAGGATCAAAGGCGATTCTGAATTTCCCGCTTGAAGTTGACAAGTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B TGAGACGGCGATCGAAGCGGCTAGAGCTTACGACAAAGAAGCGTTTAGACTACGAGGATCAAAGGCGATTCTGAATTTCCCGCTTGAAGTTGACAAGTGG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT4G17 AATCCACGCGCTGAAGATGGTCGTGGCCTGTACAACAAACGGAAGAGAGACGGCGAGGAGGAGGAAGTGACGGTGGTTGAGAAAGTGCTAAAGACGGAGG
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B AGTCCACGCGCTGAAGATGGTCGTGGCCTGTACAACAAACGGAAGAGAGACGGCGAGGAGGAGGAAGTGACGGTGGTTGAGAAAGTGCTAAAGACGGAGG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT4G17 AGAGTTACGACGTTAGCGGCGGCGAGAATGTTGAGTCAGGTTTGACGGCGATAGATGACTGGGATTTGACGGAGTTTCTGAGCATGCCGCTTTTATCGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B AGAGTTACGACGTTAGCGGCGGCGAGAATGTTGAGTCAGGTTTGACGGCGATAGATGACTGGGATTTGACGGAGTTTCTGAGCATGCCGCTTTTATCGCC
710 720 730 740 750 760 770 780 790 800
810 820 830 840
AT4G17 GTTATCTCCACACCCACCGTTTGGTTATCCACAATTGACCGTTGTT
::::::::::::::::::::::::::::::::::::::::::::::
RE_04B GTTATCTCCACACCCACCGTTTGGTTATCCACAATTGACCGTTGTT
810 820 830 840
10 20 30 40 50 60 70 80 90 100
AT4G17 MATPNEVSALFLIKKYLLDELSPLPTTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKPEIFDFDVKSEIPSESNDSFTFQSNPPRVTVQSNRKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B MATPNEVSALFLIKKYLLDELSPLPTTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKPEIFDFDVKSEIPSESNDSFTFQSNPPRVTVQSNRKP
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G17 PLKIAPPNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKW
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B PLKIAPPNRTKWIQFATGNPKPELPVPVVAAEEKGHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKW
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280
AT4G17 NPRAEDGRGLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGENVESGLTAIDDWDLTEFLSMPLLSPLSPHPPFGYPQLTVV
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B SPRAEDGRGLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGENVESGLTAIDDWDLTEFLSMPLLSPLSPHPPFGYPQLTVV
210 220 230 240 250 260 270 280
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