| Code name | RE_04B02 | |||
|---|---|---|---|---|
| Locus | AT5G25190 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.40%一致 | |||
| comment | ||||
| sequence |
>RE_04B02_543bp ATGTCACGACCACAACAACGCTTTCGAGGCGTTAGACAGAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGTCACCCTCTCTTGAAAACAAGAATCTGGC TAGGGACGTTTGAGACAGCGGAGGATGCAGCAAGGGCCTACGACGAGGCGGCTAGGCTAATGTGTGGCCCGAGAGCTCGTACTAATTTCCCATACAACCC TAATGCCATTCCTACTTCCTCTTCCAAGCTTCTATCAGCAACTCTTACCGCTAAACTCCACAAATGCTACATGGCTTCTCTTCAAATGACCAAGCAAACG CAAACACAAACGCAAACGCAGACCGCAAGATCACAATCCGCGGACAGTGACGGTGTGACGGCTAACGAAAGTCATTTGAACAGAGGAGTAACGGAGACGA CAGAGATCAAGTGGGAAGATGGAAATGCGAATATGCAACAGAATTTTAGGCCATTGGAGGAAGATCATATCGAGCAAATGATTGAGGAGCTGCTTCACTA CGGTTCCATTGAGCTTTGCTCTGTTTTACCAACTCAGACGCTG >RE_04B02_translated MSRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQT QTQTQTQTARSQSADSDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLPTQTL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 542/543 (99.8%)（アミノ酸配列で180/181 (99.4%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G25 ATGGCACGACCACAACAACGCTTTCGAGGCGTTAGACAGAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGTCACCCTCTCTTGAAAACAAGAATCTGGC
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B ATGTCACGACCACAACAACGCTTTCGAGGCGTTAGACAGAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGTCACCCTCTCTTGAAAACAAGAATCTGGC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G25 TAGGGACGTTTGAGACAGCGGAGGATGCAGCAAGGGCCTACGACGAGGCGGCTAGGCTAATGTGTGGCCCGAGAGCTCGTACTAATTTCCCATACAACCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B TAGGGACGTTTGAGACAGCGGAGGATGCAGCAAGGGCCTACGACGAGGCGGCTAGGCTAATGTGTGGCCCGAGAGCTCGTACTAATTTCCCATACAACCC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G25 TAATGCCATTCCTACTTCCTCTTCCAAGCTTCTATCAGCAACTCTTACCGCTAAACTCCACAAATGCTACATGGCTTCTCTTCAAATGACCAAGCAAACG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B TAATGCCATTCCTACTTCCTCTTCCAAGCTTCTATCAGCAACTCTTACCGCTAAACTCCACAAATGCTACATGGCTTCTCTTCAAATGACCAAGCAAACG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G25 CAAACACAAACGCAAACGCAGACCGCAAGATCACAATCCGCGGACAGTGACGGTGTGACGGCTAACGAAAGTCATTTGAACAGAGGAGTAACGGAGACGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B CAAACACAAACGCAAACGCAGACCGCAAGATCACAATCCGCGGACAGTGACGGTGTGACGGCTAACGAAAGTCATTTGAACAGAGGAGTAACGGAGACGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G25 CAGAGATCAAGTGGGAAGATGGAAATGCGAATATGCAACAGAATTTTAGGCCATTGGAGGAAGATCATATCGAGCAAATGATTGAGGAGCTGCTTCACTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B CAGAGATCAAGTGGGAAGATGGAAATGCGAATATGCAACAGAATTTTAGGCCATTGGAGGAAGATCATATCGAGCAAATGATTGAGGAGCTGCTTCACTA
410 420 430 440 450 460 470 480 490 500
510 520 530 540
AT5G25 CGGTTCCATTGAGCTTTGCTCTGTTTTACCAACTCAGACGCTG
:::::::::::::::::::::::::::::::::::::::::::
RE_04B CGGTTCCATTGAGCTTTGCTCTGTTTTACCAACTCAGACGCTG
510 520 530 540
10 20 30 40 50 60 70 80 90 100
AT5G25 MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQT
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B MSRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNAIPTSSSKLLSATLTAKLHKCYMASLQMTKQT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180
AT5G25 QTQTQTQTARSQSADSDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLPTQTL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B QTQTQTQTARSQSADSDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELCSVLPTQTL
110 120 130 140 150 160 170 180
|
|||