| Code name | RE_04B03 | |||
|---|---|---|---|---|
| Locus | AT5G44210 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
| comment | ||||
| sequence |
>RE_04B03_600bp ATGGCTCCAAGACAGGCGAACGGTAGAAGCATTGCCGTGAGTGAAGGCGGCGGAGGGAAGGCGATGACGATGACGACGATGCGGAAGGAAGTGCACTTTA GAGGTGTGAGGAAGCGTCCATGGGGTAGATACGCGGCGGAGATCCGTGACCCGGGAAAGAAAACCCGGGTTTGGCTCGGGACATTCGACACGGCGGAGGA AGCTGCAAGAGCTTACGACACCGCCGCTAGAGAGTTTCGTGGCTCCAAAGCAAAGACTAATTTCCCTCTTCCCGGAGAGTCTACTACGGTTAACGACGGT GGCGAGAACGATTCTTACGTCAACCGTACGACGGTGACGACGGCGCGTGAGATGACGCGTCAGAGATTTCCGTTTGCATGTCACCGGGAGCGTAAAGTCG TCGGTGGTTATGCTTCTGCTGGTTTTTTCTTCGATCCGTCAAGAGCTGCTTCGTTAAGAGCAGAGCTTTCTCGGGTTTGTCCGGTTCGGTTTGATCCGGT TAATATCGAGTTGAGTATTGGTATTCGAGAAACCGTAAAAGTTGAACCGAGAAGAGAACTAAACCTGGATCTTAACCTAGCTCCACCGGTGGTGGACGTT >RE_04B03_translated MAPRQANGRSIAVSEGGGGKAMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTVNDG GENDSYVNRTTVTTAREMTRQRFPFACHRERKVVGGYASAGFFFDPSRAASLRAELSRVCPVRFDPVNIELSIGIRETVKVEPRRELNLDLNLAPPVVDV |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 599/600 (99.8%)（アミノ酸配列で199/200 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G44 ATGGCTCCAAGACAGGCGAACGGTAGAAGCATTGCCGTGAGTGAAGGCGGCGGAGGGAAGACGATGACGATGACGACGATGCGGAAGGAAGTGCACTTTA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
RE_04B ATGGCTCCAAGACAGGCGAACGGTAGAAGCATTGCCGTGAGTGAAGGCGGCGGAGGGAAGGCGATGACGATGACGACGATGCGGAAGGAAGTGCACTTTA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G44 GAGGTGTGAGGAAGCGTCCATGGGGTAGATACGCGGCGGAGATCCGTGACCCGGGAAAGAAAACCCGGGTTTGGCTCGGGACATTCGACACGGCGGAGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B GAGGTGTGAGGAAGCGTCCATGGGGTAGATACGCGGCGGAGATCCGTGACCCGGGAAAGAAAACCCGGGTTTGGCTCGGGACATTCGACACGGCGGAGGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G44 AGCTGCAAGAGCTTACGACACCGCCGCTAGAGAGTTTCGTGGCTCCAAAGCAAAGACTAATTTCCCTCTTCCCGGAGAGTCTACTACGGTTAACGACGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B AGCTGCAAGAGCTTACGACACCGCCGCTAGAGAGTTTCGTGGCTCCAAAGCAAAGACTAATTTCCCTCTTCCCGGAGAGTCTACTACGGTTAACGACGGT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G44 GGCGAGAACGATTCTTACGTCAACCGTACGACGGTGACGACGGCGCGTGAGATGACGCGTCAGAGATTTCCGTTTGCATGTCACCGGGAGCGTAAAGTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B GGCGAGAACGATTCTTACGTCAACCGTACGACGGTGACGACGGCGCGTGAGATGACGCGTCAGAGATTTCCGTTTGCATGTCACCGGGAGCGTAAAGTCG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G44 TCGGTGGTTATGCTTCTGCTGGTTTTTTCTTCGATCCGTCAAGAGCTGCTTCGTTAAGAGCAGAGCTTTCTCGGGTTTGTCCGGTTCGGTTTGATCCGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B TCGGTGGTTATGCTTCTGCTGGTTTTTTCTTCGATCCGTCAAGAGCTGCTTCGTTAAGAGCAGAGCTTTCTCGGGTTTGTCCGGTTCGGTTTGATCCGGT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G44 TAATATCGAGTTGAGTATTGGTATTCGAGAAACCGTAAAAGTTGAACCGAGAAGAGAACTAAACCTGGATCTTAACCTAGCTCCACCGGTGGTGGACGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B TAATATCGAGTTGAGTATTGGTATTCGAGAAACCGTAAAAGTTGAACCGAGAAGAGAACTAAACCTGGATCTTAACCTAGCTCCACCGGTGGTGGACGTT
510 520 530 540 550 560 570 580 590 600
10 20 30 40 50 60 70 80 90 100
AT5G44 MAPRQANGRSIAVSEGGGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTVNDG
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B MAPRQANGRSIAVSEGGGGKAMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTVNDG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G44 GENDSYVNRTTVTTAREMTRQRFPFACHRERKVVGGYASAGFFFDPSRAASLRAELSRVCPVRFDPVNIELSIGIRETVKVEPRRELNLDLNLAPPVVDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B GENDSYVNRTTVTTAREMTRQRFPFACHRERKVVGGYASAGFFFDPSRAASLRAELSRVCPVRFDPVNIELSIGIRETVKVEPRRELNLDLNLAPPVVDV
110 120 130 140 150 160 170 180 190 200
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