| Code name | RE_04B07 | |||
|---|---|---|---|---|
| Locus | AT3G62420 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.30%一致 | |||
| comment | ->RE_0348(0314_塩基配列100%一致/0420_塩基配列100%一致) | |||
| sequence |
>RE_04B07_438bp ATGGGGTCGTTGCAAATGCAAACAAGTCCTGAATCCGATAATGATCCGAGGTACGCCACGGTGACGGATGAGAGGAAGAGGAAGAGAATGATCTCTAACA GAGAATCTGCTCGGAGGTCAAGGATGAGGAAACAGAAGCAACTTGGTGATTTGATCAACGAAGTCACTCTTCTCAAGAATGATAACGCTAAAATCACTGA GCAGGTTGATGAAGCTTCAAAGAAATACATTGAAATGGAGTCTAAGAACAATGTCTTGAGGGCACAGGCTTCGGAGTTGACGGATAGGTTGAGATCATTG AACTCTGTGCTTGAGATGGTTGAAGAAATTAGTGGTCAGGCTTTGGATATTCCTGAGATTCCTGAATCTATGCAGAACCCTTGGCAGACGCCTTGTCCAA TGCAACCAATCAGAGCTTCTGCTGATATGTTTGATTGC >RE_04B07_translated MGSLQMQTSPESDNDPRYATVTDERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQVDEASKKYIEMESKNNVLRAQASELTDRLRSL NSVLEMVEEISGQALDIPEIPESMQNPWQTPCPMQPIRASADMFDC |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 437/438 (99.8%)（アミノ酸配列で145/146 (99.3%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G62 ATGGGGTCGTTGCAAATGCAAACAAGTCCTGAATCCGATAATGATCCGAGGTACGCCACGGTGACGGATGAGAGGAAGAGGAAGAGAATGATCTCTAACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B ATGGGGTCGTTGCAAATGCAAACAAGTCCTGAATCCGATAATGATCCGAGGTACGCCACGGTGACGGATGAGAGGAAGAGGAAGAGAATGATCTCTAACA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G62 GAGAATCTGCTCGGAGGTCAAGGATGAGGAAACAGAAGCAACTTGGTGATTTGATCAACGAAGTCACTCTTCTCAAGAATGATAACGCTAAAATCACTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B GAGAATCTGCTCGGAGGTCAAGGATGAGGAAACAGAAGCAACTTGGTGATTTGATCAACGAAGTCACTCTTCTCAAGAATGATAACGCTAAAATCACTGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G62 GCAGGTTGATGAAGCTTCAAAGAAATACATTGAAATGGAGTCTAAGAACAATGTCTTGAGGGCACAGGCTTCGGAGTTGACGGATAGGTTGAGATCATTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B GCAGGTTGATGAAGCTTCAAAGAAATACATTGAAATGGAGTCTAAGAACAATGTCTTGAGGGCACAGGCTTCGGAGTTGACGGATAGGTTGAGATCATTG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G62 AACTCTGTGCTTGAGATGGTTGAAGAAATTAGTGGTCAGGCTTTGGATATTCCTGAGATTCCTGAATCTATGCAGAACCCTTGGCAGATGCCTTGTCCAA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
RE_04B AACTCTGTGCTTGAGATGGTTGAAGAAATTAGTGGTCAGGCTTTGGATATTCCTGAGATTCCTGAATCTATGCAGAACCCTTGGCAGACGCCTTGTCCAA
310 320 330 340 350 360 370 380 390 400
410 420 430
AT3G62 TGCAACCAATCAGAGCTTCTGCTGATATGTTTGATTGC
::::::::::::::::::::::::::::::::::::::
RE_04B TGCAACCAATCAGAGCTTCTGCTGATATGTTTGATTGC
410 420 430
10 20 30 40 50 60 70 80 90 100
AT3G62 MGSLQMQTSPESDNDPRYATVTDERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQVDEASKKYIEMESKNNVLRAQASELTDRLRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B MGSLQMQTSPESDNDPRYATVTDERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQVDEASKKYIEMESKNNVLRAQASELTDRLRSL
10 20 30 40 50 60 70 80 90 100
110 120 130 140
AT3G62 NSVLEMVEEISGQALDIPEIPESMQNPWQMPCPMQPIRASADMFDC
::::::::::::::::::::::::::::: ::::::::::::::::
RE_04B NSVLEMVEEISGQALDIPEIPESMQNPWQTPCPMQPIRASADMFDC
110 120 130 140
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