| Code name | RE_04B10 | |||
|---|---|---|---|---|
| Locus | AT5G14000 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
| comment | ->RE_0648(0420_塩基配列100%一致) | |||
| sequence |
>RE_04B10_618bp ATGGAGGTGGAGAAGAGGATTGTAGTGAATGGAGGAATGAAATTGCCAATAGGATACAGATTTCACCCAACCGAGCAAGAGCTTATCCTTCATTACTTGT TCCCAAAGGCCTTTGCTTCTCCTTTGCCTTCCTCCATCATCCCTGTCTTTGACCTCTTCTTCTCTCATCCTCTTAGTTTCCCAGGGGACCAAAAGGAGAA GCAGAGGTACTTCTTTTGCAAGAAGAGAGAAGTGTCAAGTAATGAGCATAGAATCAAGATTTCCTCTGGTGATGGTTATTGGAAACCTATTGGTAAAGAG AGACCAATCATTGCCTGTGGTAAAACATTTGGGATTAGAAGAACACTTGCTTTCTATGAAACAAACAAGTCTTCTTCTTATTGCAACAAAACTAGATGGA GCATGACAGAGTATTGTCTTGCGGGATTTGCGTCGGCTAAGGTGTCTGGAGAATGGGCAGTGTACAATGTTTATGAGAGGAAAGGCTCAAAAGGAAGAAA ACAGAGGAAATCAAGAGAGGGAGATGATGAAGAATTGAGATGCATCGACCATTTTACGGTTGGGTCAAATCATGAAACCGGTCCACCACCGCCTTCTCCT CCTACCTCAGCTGATGAG >RE_04B10_translated MEVEKRIVVNGGMKLPIGYRFHPTEQELILHYLFPKAFASPLPSSIIPVFDLFFSHPLSFPGDQKEKQRYFFCKKREVSSNEHRIKISSGDGYWKPIGKE RPIIACGKTFGIRRTLAFYETNKSSSYCNKTRWSMTEYCLAGFASAKVSGEWAVYNVYERKGSKGRKQRKSREGDDEELRCIDHFTVGSNHETGPPPPSP PTSADE |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 617/618 (99.8%)（アミノ酸配列で205/206 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G14 ATGGAGGTGGAGAAGAGGATTGTAGTGAATGGAGGAATGAAATTGCCAATAGGATACAGATTTCACCCAACCGAGCAAGAGCTTATCCTTCATTACTTGC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B ATGGAGGTGGAGAAGAGGATTGTAGTGAATGGAGGAATGAAATTGCCAATAGGATACAGATTTCACCCAACCGAGCAAGAGCTTATCCTTCATTACTTGT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G14 TCCCAAAGGCCTTTGCTTCTCCTTTGCCTTCCTCCATCATCCCTGTCTTTGACCTCTTCTTCTCTCATCCTCTTAGTTTCCCAGGGGACCAAAAGGAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B TCCCAAAGGCCTTTGCTTCTCCTTTGCCTTCCTCCATCATCCCTGTCTTTGACCTCTTCTTCTCTCATCCTCTTAGTTTCCCAGGGGACCAAAAGGAGAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G14 GCAGAGGTACTTCTTTTGCAAGAAGAGAGAAGTGTCAAGTAATGAGCATAGAATCAAGATTTCCTCTGGTGATGGTTATTGGAAACCTATTGGTAAAGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B GCAGAGGTACTTCTTTTGCAAGAAGAGAGAAGTGTCAAGTAATGAGCATAGAATCAAGATTTCCTCTGGTGATGGTTATTGGAAACCTATTGGTAAAGAG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G14 AGACCAATCATTGCCTGTGGTAAAACATTTGGGATTAGAAGAACACTTGCTTTCTATGAAACAAACAAGTCTTCTTCTTATTGCAACAAAACTAGATGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B AGACCAATCATTGCCTGTGGTAAAACATTTGGGATTAGAAGAACACTTGCTTTCTATGAAACAAACAAGTCTTCTTCTTATTGCAACAAAACTAGATGGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G14 GCATGACAGAGTATTGTCTTGCGGGATTTGCGTCGGCTAAGGTGTCTGGAGAATGGGCAGTGTACAATGTTTATGAGAGGAAAGGCTCAAAAGGAAGAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B GCATGACAGAGTATTGTCTTGCGGGATTTGCGTCGGCTAAGGTGTCTGGAGAATGGGCAGTGTACAATGTTTATGAGAGGAAAGGCTCAAAAGGAAGAAA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G14 ACAGAGGAAATCAAGAGAGGGAGATGATGAAGAATTGAGATGCATCGACCATTTTACGGTTGGGTCAAATCATGAAACCGGTCCACCACCGCCTTCTCCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B ACAGAGGAAATCAAGAGAGGGAGATGATGAAGAATTGAGATGCATCGACCATTTTACGGTTGGGTCAAATCATGAAACCGGTCCACCACCGCCTTCTCCT
510 520 530 540 550 560 570 580 590 600
610
AT5G14 CCTACCTCAGCTGATGAG
::::::::::::::::::
RE_04B CCTACCTCAGCTGATGAG
610
10 20 30 40 50 60 70 80 90 100
AT5G14 MEVEKRIVVNGGMKLPIGYRFHPTEQELILHYLLPKAFASPLPSSIIPVFDLFFSHPLSFPGDQKEKQRYFFCKKREVSSNEHRIKISSGDGYWKPIGKE
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B MEVEKRIVVNGGMKLPIGYRFHPTEQELILHYLFPKAFASPLPSSIIPVFDLFFSHPLSFPGDQKEKQRYFFCKKREVSSNEHRIKISSGDGYWKPIGKE
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G14 RPIIACGKTFGIRRTLAFYETNKSSSYCNKTRWSMTEYCLAGFASAKVSGEWAVYNVYERKGSKGRKQRKSREGDDEELRCIDHFTVGSNHETGPPPPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_04B RPIIACGKTFGIRRTLAFYETNKSSSYCNKTRWSMTEYCLAGFASAKVSGEWAVYNVYERKGSKGRKQRKSREGDDEELRCIDHFTVGSNHETGPPPPSP
110 120 130 140 150 160 170 180 190 200
AT5G14 PTSADE
::::::
RE_04B PTSADE
|
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