| Code name | RE_0500 | |||
|---|---|---|---|---|
| Locus | AT3G21175 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列98.70%一致 | |||
| comment | 0424_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0500_885bp ATGGATGATCTTCATGGAAGAAATGGTCGAATGCACATTGGTGTAGCGCAAAATCCAATGCATGTGCAGTATGAAGATCACGGTTTGCACCATATCGACA ATGAAAACAGTATGATGGATGACCATGCTGATGGTGGGATGGATGAAGGAGTGGAGACAGACATTCCTTCTCACCCTGGAAACTCAGCTGATAATCGTGG TGAAGTTGTAGACCGTGGAATTGAAAATGGAGATCAATTGACATTGTCCTTCCAGGGACAAGTTTATGTTTTTGACCGTGTCTCGCCTGAGAAGGTTCAA GCTGTGCTTTTGTTACTTGGTGGAAGGGAAGTACCACATACACTCCCAACAACCCTAGGATCACCTCATCAGAACAATAGGGGTCTATCTGGTACTCCTC AACGGCTTAGCGTTCCGCAGCGGTTAGCTTCTTTGCTCAGGTTTAGGGAGAAACGAAGAGGGAGGAACTTTGATAAGACTATTCGCTATACAGTCAGGAA AGAAGTAGCCTTGAGAATGCAGCGTAAGAAAGGTCAGTTCACGTCGGCTAAATCAAGCAATGATGATTCGGGATCCACTGGATCGGATTGGGGGTCAAAC CAGAGCTGGGCCGTAGAAGGGACTGAGACTCAGAAGCCAGAGGTTTTATGTCGACACTGTGGAACAAGTGAGAAGTCAACTCCAATGATGCGACGTGGAC CTGATGGGCCAAGAACACTTTGTAATGCGTGTGGAGTGATGTGGGCAAACAAGGGGACTCTTAGAGACCTATCCAAAGTCCCTCCTCCGCAAACACCTCA GCATCTATCTCTGAATAAGAATGAGGACGCAAATCTTGAGGCTGATCAAATGATGGAAGTAACTGGTGACATTAGCAACACACAG >RE_0500_translated MDDLHGRNGRMHIGVAQNPMHVQYEDHGLHHIDNENSMMDDHADGGMDEGVETDIPSHPGNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQ AVLLLLGGREVPHTLPTTLGSPHQNNRGLSGTPQRLSVPQRLASLLRFREKRRGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSN QSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGVMWANKGTLRDLSKVPPPQTPQHLSLNKNEDANLEADQMMEVTGDISNTQ |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 882/891 (99.0%)（アミノ酸配列で293/297 (98.7%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G21 ATGGATGATCTTCATGGAAGAAATGGTCGAATGCACATTGGTGTAGCGCAAAATCCAATGCATGTGCAGTATGAAGATCACGGTTTGCACCATATCGACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 ATGGATGATCTTCATGGAAGAAATGGTCGAATGCACATTGGTGTAGCGCAAAATCCAATGCATGTGCAGTATGAAGATCACGGTTTGCACCATATCGACA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G21 ATGAAAACAGTATGATGGATGACCATGCTGATGGTGGGATGGATGAAGGAGTGGAGACAGACATTCCTTCTCACCCTGGAAACTCAGCTGATAATCGTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 ATGAAAACAGTATGATGGATGACCATGCTGATGGTGGGATGGATGAAGGAGTGGAGACAGACATTCCTTCTCACCCTGGAAACTCAGCTGATAATCGTGG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G21 TGAAGTTGTAGACCGTGGAATTGAAAATGGAGATCAATTGACATTGTCCTTCCAGGGACAAGTTTATGTTTTTGACCGTGTCTCGCCTGAGAAGGTTCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 TGAAGTTGTAGACCGTGGAATTGAAAATGGAGATCAATTGACATTGTCCTTCCAGGGACAAGTTTATGTTTTTGACCGTGTCTCGCCTGAGAAGGTTCAA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G21 GCTGTGCTTTTGTTACTTGGTGGAAGGGAAGTACCACATACACTCCCAACAACCCTAGGATCACCTCATCAGAACAATAGGGTACTGGGTCTATCTGGTA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
RE_050 GCTGTGCTTTTGTTACTTGGTGGAAGGGAAGTACCACATACACTCCCAACAACCCTAGGATCACCTCATCAGAACAATAG------GGGTCTATCTGGTA
310 320 330 340 350 360 370 380 390
410 420 430 440 450 460 470 480 490 500
AT3G21 CTCCTCAACGGCTTAGCGTTCCGCAGCGGTTAGCTTCTTTGCTCAGGTTTAGGGAGAAACGAAAAGGGAGGAACTTTGATAAGACTATTCGCTATACAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
RE_050 CTCCTCAACGGCTTAGCGTTCCGCAGCGGTTAGCTTCTTTGCTCAGGTTTAGGGAGAAACGAAGAGGGAGGAACTTTGATAAGACTATTCGCTATACAGT
400 410 420 430 440 450 460 470 480 490
510 520 530 540 550 560 570 580 590 600
AT3G21 CAGGAAAGAAGTAGCCTTGAGAATGCAGCGTAAGAAAGGTCAGTTCACGTCGGCTAAATCAAGCAATGATGATTCTGGATCCACTGGATCGGATTGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
RE_050 CAGGAAAGAAGTAGCCTTGAGAATGCAGCGTAAGAAAGGTCAGTTCACGTCGGCTAAATCAAGCAATGATGATTCGGGATCCACTGGATCGGATTGGGGG
500 510 520 530 540 550 560 570 580 590
610 620 630 640 650 660 670 680 690 700
AT3G21 TCAAACCAGAGCTGGGCCGTAGAAGGGACTGAGACTCAGAAGCCAGAGGTTTTATGTCGACACTGTGGAACAAGTGAGAAGTCAACTCCAATGATGCGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 TCAAACCAGAGCTGGGCCGTAGAAGGGACTGAGACTCAGAAGCCAGAGGTTTTATGTCGACACTGTGGAACAAGTGAGAAGTCAACTCCAATGATGCGAC
600 610 620 630 640 650 660 670 680 690
710 720 730 740 750 760 770 780 790 800
AT3G21 GTGGACCTGATGGGCCAAGAACACTTTGTAATGCGTGTGGACTGATGTGGGCAAACAAGGGGACTCTTAGAGACCTATCCAAAGTCCCTCCTCCGCAAAC
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 GTGGACCTGATGGGCCAAGAACACTTTGTAATGCGTGTGGAGTGATGTGGGCAAACAAGGGGACTCTTAGAGACCTATCCAAAGTCCCTCCTCCGCAAAC
700 710 720 730 740 750 760 770 780 790
810 820 830 840 850 860 870 880 890
AT3G21 ACCTCAGCATCTATCTCTGAATAAGAATGAGGACGCAAATCTTGAGGCTGATCAAATGATGGAAGTAACTGGTGACATTAGCAACACACAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 ACCTCAGCATCTATCTCTGAATAAGAATGAGGACGCAAATCTTGAGGCTGATCAAATGATGGAAGTAACTGGTGACATTAGCAACACACAG
800 810 820 830 840 850 860 870 880
10 20 30 40 50 60 70 80 90 100
AT3G21 MDDLHGRNGRMHIGVAQNPMHVQYEDHGLHHIDNENSMMDDHADGGMDEGVETDIPSHPGNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 MDDLHGRNGRMHIGVAQNPMHVQYEDHGLHHIDNENSMMDDHADGGMDEGVETDIPSHPGNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQ
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G21 AVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWG
::::::::::::::::::::::::::: :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
RE_050 AVLLLLGGREVPHTLPTTLGSPHQNNR--GLSGTPQRLSVPQRLASLLRFREKRRGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWG
110 120 130 140 150 160 170 180 190
210 220 230 240 250 260 270 280 290
AT3G21 SNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKVPPPQTPQHLSLNKNEDANLEADQMMEVTGDISNTQ
:::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 SNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGVMWANKGTLRDLSKVPPPQTPQHLSLNKNEDANLEADQMMEVTGDISNTQ
200 210 220 230 240 250 260 270 280 290
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