| Code name | RE_0501 | |||
|---|---|---|---|---|
| Locus | AT3G24050 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0229_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0501_822bp ATGGAAATGGAATCATTCATGGACGACCTTTTGAACTTCTCTGTACCGGAAGAGGAAGAAGACGACGACGAACATACGCAACCACCGAGGAATATTACTC GCCGGAAAACTGGATTACGGCCAACAGACTCCTTCGGTCTCTTTAATACCGACGACCTTGGAGTGGTTGAAGAAGAGGATTTGGAATGGATTTCAAACAA AAATGCTTTTCCGGTGATTGAAACATTCGTCGGTGTATTACCGTCGGAGCATTTTCCTATAACGTCTCTTCTGGAAAGAGAAGCGACTGAGGTAAAACAG CTGAGTCCGGTTTCAGTACTTGAGACGAGTAGCCATAGCTCCACAACGACTACCTCAAACAGTAGCGGCGGAAGTAACGGAAGCACGGCCGTGGCTACGA CCACCACCACTCCAACAATAATGAGCTGTTGCGTTGGTTTTAAAGCGCCGGCTAAAGCGAGAAGCAAGCGTCGTCGTACAGGACGCCGTGATTTACGAGT TTTGTGGACAGGAAACGAGCAAGGAGGAATACAGAAGAAGAAGACGATGACTGTGGCGGCGGCTGCGTTGATTATGGGAAGGAAGTGTCAACACTGTGGA GCGGAGAAGACTCCGCAATGGAGGGCAGGACCAGCGGGGCCTAAGACTCTGTGTAACGCTTGTGGCGTGAGGTATAAGTCCGGGAGGCTAGTTCCGGAGT ATCGTCCAGCGAACAGTCCAACTTTCACGGCGGAGTTACATTCGAATTCTCACCGGAAGATTGTAGAGATGAGGAAGCAGTATCAGTCCGGTGACGGTGA CGGTGATCAGAAAGATTGTGGA >RE_0501_translated MEMESFMDDLLNFSVPEEEEDDDEHTQPPRNITRRKTGLRPTDSFGLFNTDDLGVVEEEDLEWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQ LSPVSVLETSSHSSTTTTSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRTGRRDLRVLWTGNEQGGIQKKKTMTVAAAALIMGRKCQHCG AEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQSGDGDGDQKDCG |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 821/822 (99.9%)（アミノ酸配列で273/274 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G24 ATGGAAATGGAATCATTCATGGACGACCTTTTGAACTTCTCTGTACCGGAAGAGGAAGAAGACGACGACGAACATACGCAACCACCGAGGAATATTACTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 ATGGAAATGGAATCATTCATGGACGACCTTTTGAACTTCTCTGTACCGGAAGAGGAAGAAGACGACGACGAACATACGCAACCACCGAGGAATATTACTC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G24 GCCGGAAAACTGGATTACGGCCAACAGACTCCTTCGGTCTCTTTAATACCGACGACCTTGGAGTGGTTGAAGAAGAGGATTTGGAATGGATTTCAAACAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 GCCGGAAAACTGGATTACGGCCAACAGACTCCTTCGGTCTCTTTAATACCGACGACCTTGGAGTGGTTGAAGAAGAGGATTTGGAATGGATTTCAAACAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G24 AAATGCTTTTCCGGTGATTGAAACATTCGTCGGTGTATTACCGTCGGAGCATTTTCCTATAACGTCTCTTCTGGAAAGAGAAGCGACTGAGGTAAAACAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 AAATGCTTTTCCGGTGATTGAAACATTCGTCGGTGTATTACCGTCGGAGCATTTTCCTATAACGTCTCTTCTGGAAAGAGAAGCGACTGAGGTAAAACAG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G24 CTGAGTCCGGTTTCAGTACTTGAGACGAGTAGCCATAGCTCCACAACGACTACCTCAAACAGTAGCGGCGGAAGTAACGGAAGCACGGCCGTGGCTACGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 CTGAGTCCGGTTTCAGTACTTGAGACGAGTAGCCATAGCTCCACAACGACTACCTCAAACAGTAGCGGCGGAAGTAACGGAAGCACGGCCGTGGCTACGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G24 CCACCACCACTCCAACAATAATGAGCTGTTGCGTTGGTTTTAAAGCGCCGGCTAAAGCGAGAAGCAAGCGTCGTCGTACAGGACGCCGTGATTTACGAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 CCACCACCACTCCAACAATAATGAGCTGTTGCGTTGGTTTTAAAGCGCCGGCTAAAGCGAGAAGCAAGCGTCGTCGTACAGGACGCCGTGATTTACGAGT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G24 TTTGTGGACAGGAAACGAGCAAGGAGGAATACAGAAGAAGAAGACGATGACTGTGGCGGCGGCTGCGTTGATTATGGGAAGGAAGTGTCAACACTGTGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 TTTGTGGACAGGAAACGAGCAAGGAGGAATACAGAAGAAGAAGACGATGACTGTGGCGGCGGCTGCGTTGATTATGGGAAGGAAGTGTCAACACTGTGGA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G24 GCGGAGAAGACTCCGCAATGGAGGGCAGGACCAGCGGGGCCTAAGACTCTGTGTAACGCTTGTGGCGTGAGGTATAAGTCCGGGAGGCTAGTTCCGGAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 GCGGAGAAGACTCCGCAATGGAGGGCAGGACCAGCGGGGCCTAAGACTCTGTGTAACGCTTGTGGCGTGAGGTATAAGTCCGGGAGGCTAGTTCCGGAGT
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT3G24 ATCGTCCAGCGAACAGTCCAACTTTCACGGCGGAGTTACATTCGAATTCTCACCGGAAGATTGTAGAGATGAGGAAGCAGTATCAGTCCGGTGACGGTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 ATCGTCCAGCGAACAGTCCAACTTTCACGGCGGAGTTACATTCGAATTCTCACCGGAAGATTGTAGAGATGAGGAAGCAGTATCAGTCCGGTGACGGTGA
710 720 730 740 750 760 770 780 790 800
810 820
AT3G24 CGGTGATCGGAAAGATTGTGGA
:::::::: :::::::::::::
RE_050 CGGTGATCAGAAAGATTGTGGA
810 820
10 20 30 40 50 60 70 80 90 100
AT3G24 MEMESFMDDLLNFSVPEEEEDDDEHTQPPRNITRRKTGLRPTDSFGLFNTDDLGVVEEEDLEWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 MEMESFMDDLLNFSVPEEEEDDDEHTQPPRNITRRKTGLRPTDSFGLFNTDDLGVVEEEDLEWISNKNAFPVIETFVGVLPSEHFPITSLLEREATEVKQ
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G24 LSPVSVLETSSHSSTTTTSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRTGRRDLRVLWTGNEQGGIQKKKTMTVAAAALIMGRKCQHCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 LSPVSVLETSSHSSTTTTSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRTGRRDLRVLWTGNEQGGIQKKKTMTVAAAALIMGRKCQHCG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270
AT3G24 AEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQSGDGDGDRKDCG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
RE_050 AEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQSGDGDGDQKDCG
210 220 230 240 250 260 270
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