| Code name | RE_0502 | |||
|---|---|---|---|---|
| Locus | AT3G50870 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列75.60%一致 | |||
| comment | 0520_20080115_0502_FR_52 | |||
| sequence |
>RE_0502_885bp ATGATGCAAACCCCGACCCCTCTTTCACCCCAGGGGCAATATGGCCTTTCTGGGGAAAGGTTCACCCCCCTTACCCAAACTGGCGGCTACACCACCACCA CCACCCCCAACCCCGGTCCTAACCCAAGGGCCTTCCCCTGGCAAAAGGGTGGCTTTTTCAACCAAAAGGGTAAGAACAATATCCCTCCTCCCCCCCTCGT TAACGGCCTTCTTTCTTTGGAAATTCCTTCAACAAGGTTTTGGAAGAAAAATAAAAAACTAAAACCCCCTATTTCTCCGGGGGTTTCTCCTGGCTCTTCC ACTTTTGGGAACTGGATTCCACCCAAAAACACCACCTCCAAAACGGCACCGTACAATAACGTTCCTTCTTTCTCCGCTAACAAGCCAAGTCGCGGTTGTT CCGGTGGTGGTGGTGGCGGAGGAGGCGGTGGCGGAGGTGACTCTCTTCTCGCTAGACGCTGTGCCAACTGTGACACTACTTCTACTCCACTATGGAGGAA TGGTCCTAGAGGCCCTAAGTCCCTATGCAATGCATGCGGCATTCGTTTCAAGAAGGAAGGGAGAAGAACTACTGCGGCTACAGGAAACACCGTCGTCGGA GCTGCACCGGTTCAAACCGACCAGTACGGGCATCACAACTCTGGCTACAATAATTACCATGCTGCCACTAATAACAACAATAATAATGGTACTCCGTGGG CTCATCACCACTCGACGCAGAGGGTTCCGTGTAATTATCCGGCAAATGAGATCAGGTTCATGGATGATTACGGCAGTGGAGTAGCAAACAACGTTGAATC CGACGGTGCTCACGGCGGTGTTCCGTTCCTTTCTTGGAGGCTTAATGTAGCGGATAGGGCAAGTCTTGTCCATGACTTTACCAGA >RE_0502_translated MMQTPTPLSPQGQYGLSGERFTPLTQTGGYTTTTTPNPGPNPRAFPWQKGGFFNQKGKNNIPPPPLVNGLLSLEIPSTRFWKKNKKLKPPISPGVSPGSS TFGNWIPPKNTTSKTAPYNNVPSFSANKPSRGCSGGGGGGGGGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEGRRTTAATGNTVVG AAPVQTDQYGHHNSGYNNYHAATNNNNNNGTPWAHHHSTQRVPCNYPANEIRFMDDYGSGVANNVESDGAHGGVPFLSWRLNVADRASLVHDFTR |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 795/890 (89.3%)（アミノ酸配列で223/295 (75.6%)）一致しました。
10 20 30 40 50 60 70 80 90
AT3G50 ATGATGCAGACTCCGTACACTACTTCAACGCAGGGGCAATATTGTCATTCTTGTGGAATGTTCCACCACCATAGCCAAAGCT-GCTGCTACAACAACAAC
:::::::: :: ::: : :: :::: : :::::::::::: : : :::: : : :: :::: :: :: :: ::::: :: :: :::::: :: :: :
RE_050 ATGATGCAAACCCCGACCCCTCTTTCACCCCAGGGGCAATATGGCCTTTCTGGGGAAAGGTTCACCCCCCTTACCCAAA-CTGGCGGCTACACCACCACC
10 20 30 40 50 60 70 80 90
100 110 120 130 140 150 160 170 180 190
AT3G50 AACAACTCCAACGCCGGTTCTTACTCGATGGTCTTCTCCATGCAAAACGGTGGCGTTTTCGAGCAGAACGGTGAGGACTATCATCACT-CTTCCTCCCTC
: :: : ::::: ::::: :: :: : : :: :::: :: :::::: :::::: ::::: : :: :: ::: :: :: :: ::: :: :: :: :::::
RE_050 ACCACCCCCAACCCCGGTCCTAACCCAAGGGCCTTCCCCTGGCAAAAGGGTGGCTTTTTCAACCAAAAGGGTAAGAACAAT-ATCCCTCCTCCCCCCCTC
100 110 120 130 140 150 160 170 180 190
200 210 220 230 240 250 260 270 280 290
AT3G50 GTTGACTGCACTCTCTCTCTTGG-AACTCCTTCTACGAGGCTTTGTGAGGAAGATGAGAAACGTAGACGCTCTACTTCATCTGGTGCTTCTTCTTGCATC
::: :: :: ::: ::: :::: :: :::::: :: ::: :::: :: :: :: : :::: : :: : ::: ::: : :: : :::: :: :: ::
RE_050 GTTAACGGCCTTCTTTCT-TTGGAAATTCCTTCAACAAGGTTTTGGAAGAAAAATAAAAAACTAAAACCCCCTATTTCTCCGGGGGTTTCTCCTGGC-TC
200 210 220 230 240 250 260 270 280 290
300 310 320 330 340 350 360 370 380 390
AT3G50 TCCAACTTTTGGG-ACTTGATTCACA-CCAAAAACAACAACTCCAAAACGGCACCGTACAATAACGTTCCTTCTTTCTCCGCTAACAAGCCAAGTCGCGG
: : ::::::::: ::: ::::: :: ::::::::: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 TTCCACTTTTGGGAACTGGATTC-CACCCAAAAACACCACCTCCAAAACGGCACCGTACAATAACGTTCCTTCTTTCTCCGCTAACAAGCCAAGTCGCGG
300 310 320 330 340 350 360 370 380 390
400 410 420 430 440 450 460 470 480 490
AT3G50 TTGTTCCGGTGGTGGTGGTGGCGGAGGAGGCGGTGGCGGAGGTGACTCTCTTCTCGCTAGACGCTGTGCCAACTGTGACACTACTTCTACTCCACTATGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 TTGTTCCGGTGGTGGTGGTGGCGGAGGAGGCGGTGGCGGAGGTGACTCTCTTCTCGCTAGACGCTGTGCCAACTGTGACACTACTTCTACTCCACTATGG
400 410 420 430 440 450 460 470 480 490
500 510 520 530 540 550 560 570 580 590
AT3G50 AGGAATGGTCCTAGAGGCCCTAAGTCCCTATGCAACGCATGCGGCATTCGTTTCAAGAAGGAAGAGAGAAGAACTACTGCGGCTACAGGAAACACCGTCG
::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
RE_050 AGGAATGGTCCTAGAGGCCCTAAGTCCCTATGCAATGCATGCGGCATTCGTTTCAAGAAGGAAGGGAGAAGAACTACTGCGGCTACAGGAAACACCGTCG
500 510 520 530 540 550 560 570 580 590
600 610 620 630 640 650 660 670 680 690
AT3G50 TCGGAGCTGCACCGGTTCAAACCGACCAGTACGGGCATCACAACTCTGGCTACAATAATTACCATGCTGCCACTAATAACAACAATAATAATGGTACTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 TCGGAGCTGCACCGGTTCAAACCGACCAGTACGGGCATCACAACTCTGGCTACAATAATTACCATGCTGCCACTAATAACAACAATAATAATGGTACTCC
600 610 620 630 640 650 660 670 680 690
700 710 720 730 740 750 760 770 780 790
AT3G50 GTGGGCTCATCACCACTCGACGCAGAGGGTTCCGTGTAATTATCCGGCAAATGAGATCAGGTTCATGGATGATTACGGCAGTGGAGTAGCAAACAACGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 GTGGGCTCATCACCACTCGACGCAGAGGGTTCCGTGTAATTATCCGGCAAATGAGATCAGGTTCATGGATGATTACGGCAGTGGAGTAGCAAACAACGTT
700 710 720 730 740 750 760 770 780 790
800 810 820 830 840 850 860 870 880
AT3G50 GAATCCGACGGTGCTCACGGCGGTGTTCCGTTCCTTTCTTGGAGGCTTAATGTAGCGGATAGGGCAAGTCTTGTCCATGACTTTACCAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 GAATCCGACGGTGCTCACGGCGGTGTTCCGTTCCTTTCTTGGAGGCTTAATGTAGCGGATAGGGCAAGTCTTGTCCATGACTTTACCAGA
800 810 820 830 840 850 860 870 880
10 20 30 40 50 60 70 80 90 100
AT3G50 MMQTPYTTSTQGQYCHSCGMFHHHSQSCCYNNNNNSNAGSYSMVFSMQNGGVFEQNGEDYHHSSSLVDCTLSLGTPSTRLCEEDEKRRRSTSSGASSCIS
::::: : :::: : : .:. : : : : : :: : : :.. ::. ::: :::: ....: . : : : :
RE_050 MMQTPTPLSPQGQYGLSGERFTPLTQTGGYTTTTTPNPGPNPRAFPWQKGGFFNQKGKNNIPPPPLVNGLLSLEIPSTRFWKKNKKLKPPISPGVSPGSS
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G50 NFWDLIHTKNNNSKTAPYNNVPSFSANKPSRGCSGGGGGGGGGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAATGNTVVG
: . : :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
RE_050 TFGNWIPPKNTTSKTAPYNNVPSFSANKPSRGCSGGGGGGGGGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEGRRTTAATGNTVVG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290
AT3G50 AAPVQTDQYGHHNSGYNNYHAATNNNNNNGTPWAHHHSTQRVPCNYPANEIRFMDDYGSGVANNVESDGAHGGVPFLSWRLNVADRASLVHDFTR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 AAPVQTDQYGHHNSGYNNYHAATNNNNNNGTPWAHHHSTQRVPCNYPANEIRFMDDYGSGVANNVESDGAHGGVPFLSWRLNVADRASLVHDFTR
210 220 230 240 250 260 270 280 290
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