| Code name | RE_0505 | |||
|---|---|---|---|---|
| Locus | AT3G60530 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.20%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0505_720bp ATGGACGTCTACGGCATGTCTTCACCGGACTTGCTTCGTATCGACGACCTTCTCGACTTCTCCAACGACGAAATCTTCTCTTCCTCTTCCACCGTCACTT CCTCCGCCGCTTCCTCCGCCGCTTCTTCCGAAAACCCTTTCAGCTTTCCTTCTTCCACCTACACTTCTCCTACTCTCCTCACCGACTTCACTCACGATCT CTGCGTTCCCAGTGACGACGCAGCTCATCTCGAATGGTTATCGCGATTCGTTGACGATTCATTCTCCGATTTCCCAGCAAATCCTTTAACCATGACCGTT AGACCCGAGATTTCATTCACCGGAAAACCTAGAAGTCGCCGATCAAGAGCACCAGCACCTTCCGTAGCTGGAACTTGGGCTCCGATGTCTGAATCAGAGC TTTGTCACTCCGTCGCTAAACCTAAACCGAAGAAAGTCTACAACGCTGAATCGGTTACGGCGGATGGAGCGGGGCGGTGCACGCACTGTGCCTCGGAGAA AACGCCACAGTGGAGAACTGGACCGCTTGGACCTAAAACACTTTGTAACGCTTGTGGAGTTCGTTACAAATCAGGGAGGCTTGTACCGGGATACAGACCG GCGTCGAGTCCGACGTTTGTATTGACTCAGCATTCGAACTCTCATCGGAAAGTTATGGAGCTCCGGCGACAGAAGGAACAACAAGAATCCTGCGTTCGAA TTCCGCCGTTTCAGCCGCAG >RE_0505_translated MDVYGMSSPDLLRIDDLLDFSNDEIFSSSSTVTSSAASSAASSENPFSFPSSTYTSPTLLTDFTHDLCVPSDDAAHLEWLSRFVDDSFSDFPANPLTMTV RPEISFTGKPRSRRSRAPAPSVAGTWAPMSESELCHSVAKPKPKKVYNAESVTADGAGRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPGYRP ASSPTFVLTQHSNSHRKVMELRRQKEQQESCVRIPPFQPQ |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 716/720 (99.4%)（アミノ酸配列で238/240 (99.2%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G60 ATGGACGTCTACGGCATGTCTTCACCGGACTTGCTTCGTATCGACGACCTTCTCGATTTCTCCAACGACGAAATCTTCTCTTCCTCTTCCACCGTCACTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
RE_050 ATGGACGTCTACGGCATGTCTTCACCGGACTTGCTTCGTATCGACGACCTTCTCGACTTCTCCAACGACGAAATCTTCTCTTCCTCTTCCACCGTCACTT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G60 CCTCCGCCGCTTCCTCCGCCGCTTCTTCCGAAAACCCTTTCAGCTTTCCTTCTTCCACCTACACTTCTCCTACTCTCCTCACCGACTTCACTCACGATCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 CCTCCGCCGCTTCCTCCGCCGCTTCTTCCGAAAACCCTTTCAGCTTTCCTTCTTCCACCTACACTTCTCCTACTCTCCTCACCGACTTCACTCACGATCT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G60 CTGCGTTCCCAGTGACGACGCAGCTCATCTCGAATGGTTATCGCGATTCGTTGACGATTCATTCTCCGATTTCCCAGCAAATCCTTTAACCATGACCGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 CTGCGTTCCCAGTGACGACGCAGCTCATCTCGAATGGTTATCGCGATTCGTTGACGATTCATTCTCCGATTTCCCAGCAAATCCTTTAACCATGACCGTT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G60 AGACCCGAGATTTCATTCACCGGAAAACCTAGAAGTCGCCGATCAAGAGCACCAGCACCTTCCGTAGCTGGAACTTGGGCTCCGATGTCTGAATCAGAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 AGACCCGAGATTTCATTCACCGGAAAACCTAGAAGTCGCCGATCAAGAGCACCAGCACCTTCCGTAGCTGGAACTTGGGCTCCGATGTCTGAATCAGAGC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G60 TTTGTCACTCCGTCGCTAAACCTAAACCGAAGAAAGTCTACAACGCTGAATCGGTTACGGCGGATGGAGCGAGGCGGTGCACGCACTGTGCCTCGGAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
RE_050 TTTGTCACTCCGTCGCTAAACCTAAACCGAAGAAAGTCTACAACGCTGAATCGGTTACGGCGGATGGAGCGGGGCGGTGCACGCACTGTGCCTCGGAGAA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G60 AACGCCACAGTGGAGAACTGGACCGCTTGGACCTAAAACACTTTGTAACGCTTGTGGAGTTCGTTACAAATCAGGGAGGCTTGTACCGGAATACAGACCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::
RE_050 AACGCCACAGTGGAGAACTGGACCGCTTGGACCTAAAACACTTTGTAACGCTTGTGGAGTTCGTTACAAATCAGGGAGGCTTGTACCGGGATACAGACCG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G60 GCGTCGAGTCCGACGTTTGTATTGACTCAGCATTCGAACTCTCATCGGAAAGTTATGGAGCTCCGGCGACAGAAGGAACAACAAGAATCTTGCGTTCGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::
RE_050 GCGTCGAGTCCGACGTTTGTATTGACTCAGCATTCGAACTCTCATCGGAAAGTTATGGAGCTCCGGCGACAGAAGGAACAACAAGAATCCTGCGTTCGAA
610 620 630 640 650 660 670 680 690 700
710 720
AT3G60 TTCCGCCGTTTCAGCCGCAG
::::::::::::::::::::
RE_050 TTCCGCCGTTTCAGCCGCAG
710 720
10 20 30 40 50 60 70 80 90 100
AT3G60 MDVYGMSSPDLLRIDDLLDFSNDEIFSSSSTVTSSAASSAASSENPFSFPSSTYTSPTLLTDFTHDLCVPSDDAAHLEWLSRFVDDSFSDFPANPLTMTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_050 MDVYGMSSPDLLRIDDLLDFSNDEIFSSSSTVTSSAASSAASSENPFSFPSSTYTSPTLLTDFTHDLCVPSDDAAHLEWLSRFVDDSFSDFPANPLTMTV
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G60 RPEISFTGKPRSRRSRAPAPSVAGTWAPMSESELCHSVAKPKPKKVYNAESVTADGARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: :::
RE_050 RPEISFTGKPRSRRSRAPAPSVAGTWAPMSESELCHSVAKPKPKKVYNAESVTADGAGRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPGYRP
110 120 130 140 150 160 170 180 190 200
210 220 230 240
AT3G60 ASSPTFVLTQHSNSHRKVMELRRQKEQQESCVRIPPFQPQ
::::::::::::::::::::::::::::::::::::::::
RE_050 ASSPTFVLTQHSNSHRKVMELRRQKEQQESCVRIPPFQPQ
210 220 230 240
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