| Code name | RE_0510 | |||
|---|---|---|---|---|
| Locus | AT4G34680 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列93.70%一致 | |||
| comment | 0526_second_0510_FR_55 | |||
| sequence |
>RE_0510_807bp ATGGAGCTGTGGACAGAAGCTAGAGCCTTAAAGGCAAGTCTAAGAGGAGAATCTACTATATCTCTCAAACATCACCAAGTGATTGTGTCGGAAGATTTAA GCCGAACTTCTTCCTTGCCGGAAGATTTCTCCGTTGAGTGTTTCCTCGATTTCTCAGAAGGTCAAAAAGAAGAAGAAGAAGAAGTTGTCTCTGTTTCTTC TTCACAACAGCAAGAACAACAAGAACATGATGGTGTCTTTTGTTCACCACCTTGCATCTATGATCTTCTTCCTTCTTTGCCGGAAGAAGATGTGGAACAT CTTGGATGGTTATCTCGTGTTGAGGATGATTGTTCATCACCAGAATTTTCTCTTCTCTTAACACAAACACATAACACCCAACCCTGCTTCTCAAGAATTC CGGTTCAACCAAGAACCAAACGGTCTCGGAACAGTTTAACCGGTAGTCGTGTTTGGCCACTCGTTTCAACCAATCATCAACATGCAGCAACAGAGCAGTT GAGGAAGAAGAAACAAGAAACTGTCCTTGTGTTTCAACGAAGATGCAGCCATTGTGGCACAAACAACACACCACAGTGGAGAACCGGTCCGGTCGGTCCA AAAACCTTATGTAATGCATGTGGAGTCCGGTTTAAGTCTGGTAGGCTCTGCCCGGAATACAGACCGGCGGATAGTCCGACGTTCTCGAATGAGATTCACT CAAATCTTCATAGGAAGGTTCTGGAATTAAGAAAGAGTAAAGAGTTGGGTGAAGAAACAGGTGAAGCTAGTACTAAATCAGACCCAGTCAAATTTGGCAG CAAGTGG >RE_0510_translated MELWTEARALKASLRGESTISLKHHQVIVSEDLSRTSSLPEDFSVECFLDFSEGQKEEEEEVVSVSSSQQQEQQEHDGVFCSPPCIYDLLPSLPEEDVEH LGWLSRVEDDCSSPEFSLLLTQTHNTQPCFSRIPVQPRTKRSRNSLTGSRVWPLVSTNHQHAATEQLRKKKQETVLVFQRRCSHCGTNNTPQWRTGPVGP KTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKELGEETGEASTKSDPVKFGSKW |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 786/807 (97.4%)（アミノ酸配列で252/269 (93.7%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G34 ATGGAGCTGTGGACAGAAGCTAGAGCCTTAAAGGCAAGTCTAAGAGGAGAATCTACTATATCTCTCAAACATCACCAAGTGATTGTGTCGGAAGATTTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_051 ATGGAGCTGTGGACAGAAGCTAGAGCCTTAAAGGCAAGTCTAAGAGGAGAATCTACTATATCTCTCAAACATCACCAAGTGATTGTGTCGGAAGATTTAA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G34 GCCGAACTTCTTCCTTGCCGGAAGATTTCTCCGTTGAGTGTTTCCTCGATTTCTCAGAAGGTCAAAAAGAAGAAGAAGAAGAAGTTGTCTCTGTTTCTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_051 GCCGAACTTCTTCCTTGCCGGAAGATTTCTCCGTTGAGTGTTTCCTCGATTTCTCAGAAGGTCAAAAAGAAGAAGAAGAAGAAGTTGTCTCTGTTTCTTC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G34 TTCACAAGAGCAAGAAGAACAAGAACATGATTGTGTCTTTAGTTCACAACCTTGCATCTTTGATCAACTTCCTTCTTTGCCGGATGAAGATGTGGAAGAG
::::::: :::::::: :::::::::::::: :::::::: :::::: ::::::::::: ::::: ::::::::::::::::: :::::::::::: :
RE_051 TTCACAACAGCAAGAACAACAAGAACATGATGGTGTCTTTTGTTCACCACCTTGCATCTATGATCTTCTTCCTTCTTTGCCGGAAGAAGATGTGGAACAT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G34 CTTGAATGGGTATCTCGTGTTGTGGATGATTGTTCATCACCAGAAGTTTCACTTCTCTTAACACAAACACATAAAACCAAACCAAGCTTCTCAAGAATTC
:::: :::: :::::::::::: :::::::::::::::::::::: :::: ::::::::::::::::::::::: ::: :::: :::::::::::::::
RE_051 CTTGGATGGTTATCTCGTGTTGAGGATGATTGTTCATCACCAGAATTTTCTCTTCTCTTAACACAAACACATAACACCCAACCCTGCTTCTCAAGAATTC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G34 CGGTTAAACCAAGAACCAAACGGTCTCGGAACAGTTTAACCGGTAGTCGTGTTTGGCCACTCGTTTCAACCAATCATCAACATGCAGCAACAGAGCAGTT
::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_051 CGGTTCAACCAAGAACCAAACGGTCTCGGAACAGTTTAACCGGTAGTCGTGTTTGGCCACTCGTTTCAACCAATCATCAACATGCAGCAACAGAGCAGTT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G34 GAGGAAGAAGAAACAAGAAACTGTCCTTGTGTTTCAACGAAGATGCAGCCATTGTGGCACAAACAACACACCACAGTGGAGAACCGGTCCGGTCGGTCCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_051 GAGGAAGAAGAAACAAGAAACTGTCCTTGTGTTTCAACGAAGATGCAGCCATTGTGGCACAAACAACACACCACAGTGGAGAACCGGTCCGGTCGGTCCA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT4G34 AAAACCTTATGTAATGCATGTGGAGTCCGGTTTAAGTCTGGTAGGCTCTGCCCGGAATACAGACCGGCGGATAGTCCGACGTTCTCGAATGAGATTCACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_051 AAAACCTTATGTAATGCATGTGGAGTCCGGTTTAAGTCTGGTAGGCTCTGCCCGGAATACAGACCGGCGGATAGTCCGACGTTCTCGAATGAGATTCACT
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT4G34 CAAATCTTCATAGGAAGGTTCTGGAATTAAGAAAGAGTAAAGAGTTGGGTGAAGAAACAGGTGAAGCTAGTACTAAATCAGACCCAGTCAAATTTGGCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_051 CAAATCTTCATAGGAAGGTTCTGGAATTAAGAAAGAGTAAAGAGTTGGGTGAAGAAACAGGTGAAGCTAGTACTAAATCAGACCCAGTCAAATTTGGCAG
710 720 730 740 750 760 770 780 790 800
AT4G34 CAAGTGG
:::::::
RE_051 CAAGTGG
10 20 30 40 50 60 70 80 90 100
AT4G34 MELWTEARALKASLRGESTISLKHHQVIVSEDLSRTSSLPEDFSVECFLDFSEGQKEEEEEVVSVSSSQEQEEQEHDCVFSSQPCIFDQLPSLPDEDVEE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::.:::: :: : :::.: :::::.::::
RE_051 MELWTEARALKASLRGESTISLKHHQVIVSEDLSRTSSLPEDFSVECFLDFSEGQKEEEEEVVSVSSSQQQEQQEHDGVFCSPPCIYDLLPSLPEEDVEH
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G34 LEWVSRVVDDCSSPEVSLLLTQTHKTKPSFSRIPVKPRTKRSRNSLTGSRVWPLVSTNHQHAATEQLRKKKQETVLVFQRRCSHCGTNNTPQWRTGPVGP
: :.::: ::::::: :::::::: :.: ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_051 LGWLSRVEDDCSSPEFSLLLTQTHNTQPCFSRIPVQPRTKRSRNSLTGSRVWPLVSTNHQHAATEQLRKKKQETVLVFQRRCSHCGTNNTPQWRTGPVGP
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260
AT4G34 KTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKELGEETGEASTKSDPVKFGSKW
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_051 KTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKELGEETGEASTKSDPVKFGSKW
210 220 230 240 250 260
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