◆◆◆RE_0517 detail◆◆◆

Code name	RE_0517
Locus	AT5G56860
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0520_third_0517_FRW1_555
sequence	>RE_0517_1194bp ATGGATTCAAATTTTCATTACTCGATAGATCTTAACGAAGATCAAAACCATCACGAACAACCCTTTTTCTATCCTCTTGGATCCTCTTCCTCGCTTCATC ATCATCATCATCATCATCATCATCAAGTCCCTTCTAATTCTTCATCTTCTTCTTCGTCCATTTCATCGCTCTCCTCTTACCTCCCTTTCTTGATCAACTC TCAAGAAGATCAACATGTTGCCTACAACAACACTTATCACGCTGATCATCTCCATCTTTCTCAACCCCTCAAGGCCAAGATGTTTGTGGCTAACGGTGGA TCATCAGCATGCGATCACATGGTGCCAAAGAAGGAGACAAGACTGAAACTAACGATAAGGAAAAAAGATCACGAAGACCAACCCCATCCTCTTCATCAAA ACCCGACAAAACCCGATTCAGACTCCGACCAGTGGTTGATGTCCCCAAAGATGCGGTTGATCAAGAAAACAATAACCAACAATAAACAGCTCATTGATCA GACTAATAATAATAATCATAAAGAAAGTGATCACTACCCTTTGAATCATAAGACTAATTTCGACGAGGATCACCATGAAGATCTTAATTTCAAGAACGTC TTGACCAGGAAGACCACGGCCGCGACCACCGAGAATCGCTACAATACAATCAACGAGAACGGTTATAGTAATAACAATGGCGTGATTAGGGTTTGTTCGG ATTGTAACACCACCAAGACTCCTCTTTGGCGAAGTGGACCTCGAGGTCCCAAGTCTCTTTGTAACGCATGTGGTATACGGCAAAGAAAGGCAAGGCGAGC CGCTATGGCCGCGGCCGCTGCAGCCGGCGACCAAGAGGTGGCGGTAGCGCCCCGAGTGCAACAATTACCGCTGAAAAAGAATTTGCAAAATAAAAAAAAG AGATCAAACGGAGGGGAAAAATACAATCACTCTCCTCCAATGGTGGCCAAGGCCAAAAAGTGCAAGATCAAAGAGGAAGAGGAGAAGGAAATGGAAGCGG AAACGGTTGCCGGAGATTCAGAGATCAGCAAATCTACAACTTCTTCTAATTCTTCGATTTCGTCAAACAAATTTTGCTTCGATGATTTGACAATAATGTT GAGCAAAAGCTCAGCTTATCAACAAGTGTTCCCACAAGATGAGAAGGAGGCTGCTGTTTTGCTCATGGCTCTGTCGTATGGAATGGTTCACGGT >RE_0517_translated MDSNFHYSIDLNEDQNHHEQPFFYPLGSSSSLHHHHHHHHHQVPSNSSSSSSSISSLSSYLPFLINSQEDQHVAYNNTYHADHLHLSQPLKAKMFVANGG SSACDHMVPKKETRLKLTIRKKDHEDQPHPLHQNPTKPDSDSDQWLMSPKMRLIKKTITNNKQLIDQTNNNNHKESDHYPLNHKTNFDEDHHEDLNFKNV LTRKTTAATTENRYNTINENGYSNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAAAGDQEVAVAPRVQQLPLKKNLQNKKK RSNGGEKYNHSPPMVAKAKKCKIKEEEEKEMEAETVAGDSEISKSTTSSNSSISSNKFCFDDLTIMLSKSSAYQQVFPQDEKEAAVLLMALSYGMVHG
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1191/1194 (99.7%)（アミノ酸配列で396/398 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G56 ATGGATTCAAATTTTCATTACTCGATAGATCTTAACGAAGATCAAAACCATCACGAACAACCCTTTTTCTATCCTCTTGGATCCTCTTCCTCGCTTCATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 ATGGATTCAAATTTTCATTACTCGATAGATCTTAACGAAGATCAAAACCATCACGAACAACCCTTTTTCTATCCTCTTGGATCCTCTTCCTCGCTTCATC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G56 ATCATCATCATCATCATCATCATCAAGTCCCTTCTAATTCTTCATCTTCTTCTTCGTCCATTTCATCGCTCTCCTCTTACCTCCCTTTCTTGATCAACTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 ATCATCATCATCATCATCATCATCAAGTCCCTTCTAATTCTTCATCTTCTTCTTCGTCCATTTCATCGCTCTCCTCTTACCTCCCTTTCTTGATCAACTC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G56 TCAAGAAGATCAACATGTTGCCTACAACAACACTTATCACGCTGATCATCTCCATCTTTCTCAACCCCTCAAGGCCAAGATGTTTGTGGCTAACGGTGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 TCAAGAAGATCAACATGTTGCCTACAACAACACTTATCACGCTGATCATCTCCATCTTTCTCAACCCCTCAAGGCCAAGATGTTTGTGGCTAACGGTGGA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G56 TCATCAGCATGCGATCACATGGTGCCAAAGAAGGAGACAAGACTGAAACTAACGATAAGGAAAAAAGATCACGAAGACCAACCCCATCCTCTTCATCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 TCATCAGCATGCGATCACATGGTGCCAAAGAAGGAGACAAGACTGAAACTAACGATAAGGAAAAAAGATCACGAAGACCAACCCCATCCTCTTCATCAAA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G56 ACCCGACAAAACCCGATTCAGACTCCGACAAGTGGTTGATGTCCCCAAAGATGCGGTTGATCAAGAAAACAATCACCAACAATAAACAGCTCATTGATCA ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: RE_051 ACCCGACAAAACCCGATTCAGACTCCGACCAGTGGTTGATGTCCCCAAAGATGCGGTTGATCAAGAAAACAATAACCAACAATAAACAGCTCATTGATCA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G56 GACTAATAATAATAATCATAAAGAAAGTGATCACTACCCTTTGAATCATAAGACTAATTTCGACGAGGATCACCATGAAGATCTTAATTTCAAGAACGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 GACTAATAATAATAATCATAAAGAAAGTGATCACTACCCTTTGAATCATAAGACTAATTTCGACGAGGATCACCATGAAGATCTTAATTTCAAGAACGTC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G56 TTGACCAGGAAGACCACGGCCGCGACCACCGAGAATCGCTACAATACAATCAACGAGAACGGTTATAGTAATAACAATGGCGTGATTAGGGTTTGTTCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 TTGACCAGGAAGACCACGGCCGCGACCACCGAGAATCGCTACAATACAATCAACGAGAACGGTTATAGTAATAACAATGGCGTGATTAGGGTTTGTTCGG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G56 ATTGTAACACCACCAAGACTCCTCTTTGGCGAAGTGGACCTCGAGGTCCCAAGTCTCTTTGTAACGCATGTGGTATACGGCAAAGAAAGGCAAGGCGAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 ATTGTAACACCACCAAGACTCCTCTTTGGCGAAGTGGACCTCGAGGTCCCAAGTCTCTTTGTAACGCATGTGGTATACGGCAAAGAAAGGCAAGGCGAGC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G56 CGCTATGGCCGCGGCCGCTGCAGCCGGCGACCAAGAGGTGGCGGTAGCGCCCCGAGTGCAACAATTACCGCTGAAAAAGAAGTTGCAAAATAAAAAAAAG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: RE_051 CGCTATGGCCGCGGCCGCTGCAGCCGGCGACCAAGAGGTGGCGGTAGCGCCCCGAGTGCAACAATTACCGCTGAAAAAGAATTTGCAAAATAAAAAAAAG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G56 AGATCAAACGGAGGGGAAAAATACAATCACTCTCCTCCAATGGTGGCCAAGGCCAAAAAGTGCAAGATCAAAGAGGAAGAGGAGAAGGAAATGGAAGCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 AGATCAAACGGAGGGGAAAAATACAATCACTCTCCTCCAATGGTGGCCAAGGCCAAAAAGTGCAAGATCAAAGAGGAAGAGGAGAAGGAAATGGAAGCGG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G56 AAACGGTTGCCGGAGATTCAGAGATCAGCAAATCTACAACTTCTTCTAATTCTTCGATTTCGTCAAACAAATTTTGCTTCGATGATTTGACAATAATGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 AAACGGTTGCCGGAGATTCAGAGATCAGCAAATCTACAACTTCTTCTAATTCTTCGATTTCGTCAAACAAATTTTGCTTCGATGATTTGACAATAATGTT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 AT5G56 GAGCAAAAGCTCAGCTTATCAACAAGTGTTCCCACAAGATGAGAAGGAGGCTGCTGTTTTGCTCATGGCTCTGTCGTATGGAATGGTTCACGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 GAGCAAAAGCTCAGCTTATCAACAAGTGTTCCCACAAGATGAGAAGGAGGCTGCTGTTTTGCTCATGGCTCTGTCGTATGGAATGGTTCACGGT 1110 1120 1130 1140 1150 1160 1170 1180 1190 10 20 30 40 50 60 70 80 90 100 AT5G56 MDSNFHYSIDLNEDQNHHEQPFFYPLGSSSSLHHHHHHHHHQVPSNSSSSSSSISSLSSYLPFLINSQEDQHVAYNNTYHADHLHLSQPLKAKMFVANGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 MDSNFHYSIDLNEDQNHHEQPFFYPLGSSSSLHHHHHHHHHQVPSNSSSSSSSISSLSSYLPFLINSQEDQHVAYNNTYHADHLHLSQPLKAKMFVANGG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G56 SSACDHMVPKKETRLKLTIRKKDHEDQPHPLHQNPTKPDSDSDKWLMSPKMRLIKKTITNNKQLIDQTNNNNHKESDHYPLNHKTNFDEDHHEDLNFKNV :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 SSACDHMVPKKETRLKLTIRKKDHEDQPHPLHQNPTKPDSDSDQWLMSPKMRLIKKTITNNKQLIDQTNNNNHKESDHYPLNHKTNFDEDHHEDLNFKNV 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G56 LTRKTTAATTENRYNTINENGYSNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAAAGDQEVAVAPRVQQLPLKKKLQNKKK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: RE_051 LTRKTTAATTENRYNTINENGYSNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAAAGDQEVAVAPRVQQLPLKKNLQNKKK 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 AT5G56 RSNGGEKYNHSPPMVAKAKKCKIKEEEEKEMEAETVAGDSEISKSTTSSNSSISSNKFCFDDLTIMLSKSSAYQQVFPQDEKEAAVLLMALSYGMVHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_051 RSNGGEKYNHSPPMVAKAKKCKIKEEEEKEMEAETVAGDSEISKSTTSSNSSISSNKFCFDDLTIMLSKSSAYQQVFPQDEKEAAVLLMALSYGMVHG 310 320 330 340 350 360 370 380 390

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