âââRE_0520 detailâââ

Code name	RE_0520
Locus	AT1G05230
Forward primer
Reverse primer
Alignment with TAIR7CDS	ã¢ããé¸éå99.90%ä¸è´
comment	0526_20080115_0520_ŒÂ•Ê
sequence	>RE_0520_2163bp ATGTTCGAGCCAAATATGCTGCTTGCGGCTATGAACAACGCAGACAGCAATAACCACAACTACAACCATGAAGACAACAATAATGAAGGATTTCTTCGGG ACGATGAATTCGACAGTCCGAATACTAAATCGGGAAGTGAGAATCAAGAAGGAGGATCAGGAAACGACCAAGATCCTCTTCATCCTAACAAGAAGAAACG ATATCATCGACACACCCAACTTCAGATCCAGGAGATGGAAGCGTTCTTCAAAGAGTGTCCTCACCCAGATGACAAGCAAAGGAAACAGCTAAGCCGTGAA TTGAATTTGGAACCTCTTCAGGTCAAATTCTGGTTCCAAAACAAACGTACCCAAATGAAGAATCATCACGAGCGGCATGAGAACTCACATCTTCGGGCGG AGAACGAAAAGCTTCGAAACGACAACCTAAGATATCGAGAGGCTCTTGCAAATGCTTCGTGTCCTAATTGTGGTGGTCCAACAGCTATCGGAGAAATGTC ATTCGACGAACACCAACTCCGTCTCGAAAATGCTCGATTAAGGGAAGAGATCGACCGTATATCCGCAATCGCAGCTAAATACGTAGGCAAGCCAGTCTCA AACTATCCACTTATGTCTCCTCCTCCTCTTCCTCCACGTCCACTAGAACTCGCCATGGGAAATATTGGAGGAGAAGCTTATGGAAACAATCCAAACGATC TCCTTAAGTCCATCACTGCGCCAACAGAATCTGACAAACCTGTCATCATCGACTTATCCGTGGCTGCAATGGAAGAGCTCATGAGGATGGTTCAAGTAGA CGAGCCTCTGTGGAAGAGTTTGGTTTTAGACGAAGAAGAATATGCAAGGACCTTTCCTAGAGGGATCGGACCTAGACCGGCTGGATATAGATCAGAAGCT TCGCGAGAAAGCGCGGTTGTGATCATGAATCATGTTAACATCGTTGAGATTCTCATGGATGTGAATCAATGGTCGACGATTTTCGCGGGGATGGTTTCTA GAGCAATGACATTAGCGGTTTTATCGACAGGAGTTGCAGGAAACTATAATGGAGCTCTTCAAGTGATGAGTGCAGAGTTTCAAGTTCCATCTCCATTAGT CCCAACACGTGAAACCTATTTCGCACGTTACTGTAAACAACAAGGAGATGGTTCGTGGGCGGTTGTCGATATTTCGTTGGATAGTCTCCAACCAAATCCC CCGGCTAGATGCAGGCGGCGAGCTTCAGGATGTTTGATTCAAGAATTGCCAAATGGATATTCTAAGGTGACTTGGGTGGAGCATGTGGAAGTTGATGACA GAGGAGTTCATAACTTATACAAACACATGGTTAGTACTGGTCATGCCTTTGGTGCTAAACGCTGGGTAGCCATTCTTGACCGCCAATGCGAGCGGTTAGC TAGTGTCATGGCTACAAACATTTCCTCTGGAGAAGTTGGCGTGATAACCAACCAAGAAGGGAGGAGGAGTATGCTGAAATTGGCAGAGCGGATGGTTATA AGCTTTTGTGCAGGAGTGAGTGCTTCAACCGCTCACACGTGGACTACATTGTCCGGTACAGGAGCTGAAGATGTTAGAGTGATGACTAGGAAGAGTGTGG ATGATCCAGGAAGGCCTCCTGGTATTGTTCTTAGTGCAGCCACTTCTTTTTGGATCCCTGTTCCTCCAAAGCGAGTCTTTGACTTCCTCAGAGACGAGAA TTCAAGAAATGAGTGGGATATTCTGTCTAATGGAGGAGTTGTGCAAGAAATGGCACATATTGCTAACGGGAGGGATACCGGAAACTGTGTTTCTCTTCTT CGGGTAAATAGTGCAAACTCTAGCCAGAGCAATATGCTGATCCTACAAGAGAGCTGCACTGATCCTACAGCTTCCTTTGTGATCTATGCTCCAGTCGATA TTGTAGCTATGAACATAGTGCTTAATGGAGGTGATCCAGACTATGTGGCTCTGCTTCCATCAGGTTTTGCTATTCTTCCTGATGGTAATGCCAATAGTGG AGCCCCTGGAGGAGATGGAGGGTCGCTCTTGACTGTTGCTTCTCAGATTCTGGTTGACTCAGTTCCTACGGCTAAGCTGTCTCTTGGCTCTGTTGCAACT GTCAACAATCTAATAGCTTGCACTGTTGAGAGAATCAAAGCTTCAATGTCTTGTGAGACTGCT >RE_0520_translated MFEPNMLLAAMNNADSNNHNYNHEDNNNEGFLRDDEFDSPNTKSGSENQEGGSGNDQDPLHPNKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRE LNLEPLQVKFWFQNKRTQMKNHHERHENSHLRAENEKLRNDNLRYREALANASCPNCGGPTAIGEMSFDEHQLRLENARLREEIDRISAIAAKYVGKPVS NYPLMSPPPLPPRPLELAMGNIGGEAYGNNPNDLLKSITAPTESDKPVIIDLSVAAMEELMRMVQVDEPLWKSLVLDEEEYARTFPRGIGPRPAGYRSEA SRESAVVIMNHVNIVEILMDVNQWSTIFAGMVSRAMTLAVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRETYFARYCKQQGDGSWAVVDISLDSLQPNP PARCRRRASGCLIQELPNGYSKVTWVEHVEVDDRGVHNLYKHMVSTGHAFGAKRWVAILDRQCERLASVMATNISSGEVGVITNQEGRRSMLKLAERMVI SFCAGVSASTAHTWTTLSGTGAEDVRVMTRKSVDDPGRPPGIVLSAATSFWIPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLL RVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNIVLNGGDPDYVALLPSGFAILPDGNANSGAPGGDGGSLLTVASQILVDSVPTAKLSLGSVAT VNNLIACTVERIKASMSCETA
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 2161/2163 (99.9%)（アミノ酸配列で208/208 (100.0%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G05 ATGTTCGAGCCAAATATGCTGCTTGCGGCTATGAACAACGCAGACAGCAATAACCACAACTACAACCATGAAGACAACAATAATGAAGGATTTCTTCGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 ATGTTCGAGCCAAATATGCTGCTTGCGGCTATGAACAACGCAGACAGCAATAACCACAACTACAACCATGAAGACAACAATAATGAAGGATTTCTTCGGG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G05 ACGATGAATTCGACAGTCCGAATACTAAATCGGGAAGTGAGAATCAAGAAGGAGGATCAGGAAACGACCAAGATCCTCTTCATCCTAACAAGAAGAAACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 ACGATGAATTCGACAGTCCGAATACTAAATCGGGAAGTGAGAATCAAGAAGGAGGATCAGGAAACGACCAAGATCCTCTTCATCCTAACAAGAAGAAACG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G05 ATATCATCGACACACCCAACTTCAGATCCAGGAGATGGAAGCGTTCTTCAAAGAGTGTCCTCACCCAGATGACAAGCAAAGGAAACAGCTAAGCCGTGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 ATATCATCGACACACCCAACTTCAGATCCAGGAGATGGAAGCGTTCTTCAAAGAGTGTCCTCACCCAGATGACAAGCAAAGGAAACAGCTAAGCCGTGAA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G05 TTGAATTTGGAACCTCTTCAGGTCAAATTCTGGTTCCAAAACAAACGTACCCAAATGAAGAATCATCACGAGCGGCATGAGAACTCACATCTTCGGGCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 TTGAATTTGGAACCTCTTCAGGTCAAATTCTGGTTCCAAAACAAACGTACCCAAATGAAGAATCATCACGAGCGGCATGAGAACTCACATCTTCGGGCGG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G05 AGAACGAAAAGCTTCGAAACGACAACCTAAGATATCGAGAGGCTCTTGCAAATGCTTCGTGTCCTAATTGTGGTGGTCCAACAGCTATCGGAGAAATGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 AGAACGAAAAGCTTCGAAACGACAACCTAAGATATCGAGAGGCTCTTGCAAATGCTTCGTGTCCTAATTGTGGTGGTCCAACAGCTATCGGAGAAATGTC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G05 ATTCGACGAACACCAACTCCGTCTCGAAAATGCTCGATTAAGGGAAGAGATCGACCGTATATCCGCAATCGCAGCTAAATACGTAGGCAAGCCAGTCTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 ATTCGACGAACACCAACTCCGTCTCGAAAATGCTCGATTAAGGGAAGAGATCGACCGTATATCCGCAATCGCAGCTAAATACGTAGGCAAGCCAGTCTCA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G05 AACTATCCACTTATGTCTCCTCCTCCTCTTCCTCCACGTCCACTAGAACTCGCCATGGGAAATATTGGAGGAGAAGCTTATGGAAACAATCCAAACGATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 AACTATCCACTTATGTCTCCTCCTCCTCTTCCTCCACGTCCACTAGAACTCGCCATGGGAAATATTGGAGGAGAAGCTTATGGAAACAATCCAAACGATC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G05 TCCTTAAGTCCATCACTGCACCAACAGAATCTGACAAACCTGTCATCATCGACTTATCCGTGGCTGCAATGGAAGAGCTCATGAGGATGGTTCAAGTAGA ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 TCCTTAAGTCCATCACTGCGCCAACAGAATCTGACAAACCTGTCATCATCGACTTATCCGTGGCTGCAATGGAAGAGCTCATGAGGATGGTTCAAGTAGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G05 CGAGCCTCTGTGGAAGAGTTTGGTTTTAGACGAAGAAGAATATGCAAGGACCTTTCCTAGAGGGATCGGACCTAGACCGGCTGGATATAGATCAGAAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 CGAGCCTCTGTGGAAGAGTTTGGTTTTAGACGAAGAAGAATATGCAAGGACCTTTCCTAGAGGGATCGGACCTAGACCGGCTGGATATAGATCAGAAGCT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G05 TCGCGAGAAAGCGCGGTTGTGATCATGAATCATGTTAACATCGTTGAGATTCTCATGGATGTGAATCAATGGTCGACGATTTTCGCGGGGATGGTTTCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 TCGCGAGAAAGCGCGGTTGTGATCATGAATCATGTTAACATCGTTGAGATTCTCATGGATGTGAATCAATGGTCGACGATTTTCGCGGGGATGGTTTCTA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G05 GAGCAATGACATTAGCGGTTTTATCGACAGGAGTTGCAGGAAACTATAATGGAGCTCTTCAAGTGATGAGTGCAGAGTTTCAAGTTCCATCTCCATTAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 GAGCAATGACATTAGCGGTTTTATCGACAGGAGTTGCAGGAAACTATAATGGAGCTCTTCAAGTGATGAGTGCAGAGTTTCAAGTTCCATCTCCATTAGT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT1G05 CCCAACACGTGAAACCTATTTCGCACGTTACTGTAAACAACAAGGAGATGGTTCGTGGGCGGTTGTCGATATTTCGTTGGATAGTCTCCAACCAAATCCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 CCCAACACGTGAAACCTATTTCGCACGTTACTGTAAACAACAAGGAGATGGTTCGTGGGCGGTTGTCGATATTTCGTTGGATAGTCTCCAACCAAATCCC 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT1G05 CCGGCTAGATGCAGGCGGCGAGCTTCAGGATGTTTGATTCAAGAATTGCCAAATGGATATTCTAAGGTGACTTGGGTGGAGCATGTGGAAGTTGATGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 CCGGCTAGATGCAGGCGGCGAGCTTCAGGATGTTTGATTCAAGAATTGCCAAATGGATATTCTAAGGTGACTTGGGTGGAGCATGTGGAAGTTGATGACA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT1G05 GAGGAGTTCATAACTTATACAAACACATGGTTAGTACTGGTCATGCCTTTGGTGCTAAACGCTGGGTAGCCATTCTTGACCGCCAATGCGAGCGGTTAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 GAGGAGTTCATAACTTATACAAACACATGGTTAGTACTGGTCATGCCTTTGGTGCTAAACGCTGGGTAGCCATTCTTGACCGCCAATGCGAGCGGTTAGC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT1G05 TAGTGTCATGGCTACAAACATTTCCTCTGGAGAAGTTGGCGTGATAACCAACCAAGAAGGGAGGAGGAGTATGCTGAAATTGGCAGAGCGGATGGTTATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 TAGTGTCATGGCTACAAACATTTCCTCTGGAGAAGTTGGCGTGATAACCAACCAAGAAGGGAGGAGGAGTATGCTGAAATTGGCAGAGCGGATGGTTATA 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT1G05 AGCTTTTGTGCAGGAGTGAGTGCTTCAACCGCTCACACGTGGACTACATTGTCCGGTACAGGAGCTGAAGATGTTAGAGTGATGACTAGGAAGAGTGTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 AGCTTTTGTGCAGGAGTGAGTGCTTCAACCGCTCACACGTGGACTACATTGTCCGGTACAGGAGCTGAAGATGTTAGAGTGATGACTAGGAAGAGTGTGG 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT1G05 ATGATCCAGGAAGGCCTCCTGGTATTGTTCTTAGTGCAGCCACTTCTTTTTGGATCCCTGTTCCTCCAAAGCGAGTCTTTGACTTCCTCAGAGACGAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 ATGATCCAGGAAGGCCTCCTGGTATTGTTCTTAGTGCAGCCACTTCTTTTTGGATCCCTGTTCCTCCAAAGCGAGTCTTTGACTTCCTCAGAGACGAGAA 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT1G05 TTCAAGAAATGAGTGGGATATTCTGTCTAATGGAGGAGTTGTGCAAGAAATGGCACATATTGCTAACGGGAGGGATACCGGAAACTGTGTTTCTCTTCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 TTCAAGAAATGAGTGGGATATTCTGTCTAATGGAGGAGTTGTGCAAGAAATGGCACATATTGCTAACGGGAGGGATACCGGAAACTGTGTTTCTCTTCTT 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 AT1G05 CGGGTAAATAGTGCAAACTCTAGCCAGAGCAATATGCTGATCCTACAAGAGAGCTGCACTGATCCTACAGCTTCCTTTGTGATCTATGCTCCAGTCGATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 CGGGTAAATAGTGCAAACTCTAGCCAGAGCAATATGCTGATCCTACAAGAGAGCTGCACTGATCCTACAGCTTCCTTTGTGATCTATGCTCCAGTCGATA 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000 AT1G05 TTGTAGCTATGAACATAGTGCTTAATGGAGGTGATCCAGACTATGTGGCTCTGCTTCCATCAGGTTTTGCTATTCTTCCTGATGGTAATGCCAATAGTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 TTGTAGCTATGAACATAGTGCTTAATGGAGGTGATCCAGACTATGTGGCTCTGCTTCCATCAGGTTTTGCTATTCTTCCTGATGGTAATGCCAATAGTGG 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100 AT1G05 AGCCCCTGGAGGAGATGGAGGGTCGCTCTTGACTGTTGCTTTTCAGATTCTGGTTGACTCAGTTCCTACGGCTAAGCTGTCTCTTGGCTCTGTTGCAACT ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 AGCCCCTGGAGGAGATGGAGGGTCGCTCTTGACTGTTGCTTCTCAGATTCTGGTTGACTCAGTTCCTACGGCTAAGCTGTCTCTTGGCTCTGTTGCAACT 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100 2110 2120 2130 2140 2150 2160 AT1G05 GTCAACAATCTAATAGCTTGCACTGTTGAGAGAATCAAAGCTTCAATGTCTTGTGAGACTGCT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_052 GTCAACAATCTAATAGCTTGCACTGTTGAGAGAATCAAAGCTTCAATGTCTTGTGAGACTGCT 2110 2120 2130 2140 2150 2160 10 20 30 40 50 60 70 80 90 100 AT5G20 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_129 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDS 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G20 LQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILISKRRNEKMMAEEQRQLTFQLQQQEMAIASNARGMMMRDHDGQFGYRVQPIQPNLQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_129 LQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILISKRRNEKMMAEEQRQLTFQLQQQEMAIASNARGMMMRDHDGQFGYRVQPIQPNLQE 110 120 130 140 150 160 170 180 190 200 AT5G20 KIMSLVID :::::::: RE_129 KIMSLVID

このページのTOPに戻る

âââRE_0520 detailâââ

âââRE_0520 detailâââ