◆◆◆RE_0536 detail◆◆◆

Code name	RE_0536
Locus	AT2G16400
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0536_1446bp ATGGCCACTTATTACAAAACTGGCTCAAGTGAGATTTATTCCAGACCAGAATTTGTCCCTGGAAACGCAATGAACTACACAAATTCTTTCACAGAGACAT TTCCTAGAGATTCAACTAATAATGTGTCACCTTCAAAAGAGATTCAAGTGTTGTCAAGCCTTGGTGGAGTTTCACAAATGGTTGAGATTCAAGATTCTGG TTCTTGGAGAGATCAAGAAGACAATGACAGGAATCGCTTCCCGGTGATGAGGCGTCTTGGCCTCAGCTCGCAGATTGAGACATCGAGAGGCAATAATAAC AATGAGTATGCAACACAGGTTGTTTCGGGATTTACTCGAACCATTCACAACTCAAAGTATCTCAAAGCTGCTCAAGAGCTTCTTGATGAAACTGTTAATG TTAAGAAAGCTCTAAAGCAGTTTCAGCCAGAGGGAGATAAGATTAATGAAGTGAAAGAGAAGAATCTTCAGACGAATACTGCTGAAATCCCTCAAGCAGA GAGGCAAGAATTGCAGAGCAAGTTGTCGAAACTTTTATCGATATTAGACGAGGTGGATAGAAATTACAAGCAGTATTACCATCAGATGCAGATAGTCGTG TCGTCTTTCGATGTAATAGCCGGATGTGGAGCAGCCAAACCATACACAGCCCTTGCGCTTCAGACCATCTCGAGGCATTTCCGTTGCTTAAGGGATGCGA TATCCGGACAAATCTTGGTGATAAGGAAAAGTTTAGGAGGGGAACAGGATGGATCAGATGGGAGAGGAGTGGGGATAAGCAGGTTAAGGAATGTTGATCA ACAGGTAAGGCAACAAAGAGCGTTGCAGCGGTTAGGTGTGATGCAACCTCACACTTGGCGGCCTCAACGCGGTTTACCAGATTCTTCTGTTTTGGTTCTC CGTGCTTGGCTATTTGAGCATTTCCTCCACCCTTATCCAAAGGATTCAGACAAGATCATGCTCGCTAGACAAACGGGGTTGAGCCGAGGCCAGGTATCGA ACTGGTTCATAAATGCGCGTGTGCGTCTCTGGAAACCGATGGTGGAGGAGATGTACAAGGAGGAATTCACAGATGCATTGCAGGAGAATGATCCCAACCA GTCTTCTGAAAACACACCAGAAATCACCGAGATTCAAGAGCTGCAAACTGAGTCTAGTTCCAACAATGGGCATGTACCTGGTGTGGCAAGCAGTAGCATG AGACAAAACACAGTGGCCCATGGTGGTGACCGGTTCATGATGGTGACTGACATGACAAGAAATGGTAATGGTGGGATGTCTTTAACGTTGGGGATTCAGA ATTCCGATGCTCGTGGCGATGTTCCTATGTCCGGTGGGATAGATAACTACAAGAATACCATCTCGGGAACCGATCTACAGTACTTAAACTCTCGCAACCA CCAGCACCAGATTGGCTCTTCACAATTGTTGCATGATTTTATAGCT >RE_0536_translated MATYYKTGSSEIYSRPEFVPGNAMNYTNSFTETFPRDSTNNVSPSKEIQVLSSLGGVSQMVEIQDSGSWRDQEDNDRNRFPVMRRLGLSSQIETSRGNNN NEYATQVVSGFTRTIHNSKYLKAAQELLDETVNVKKALKQFQPEGDKINEVKEKNLQTNTAEIPQAERQELQSKLSKLLSILDEVDRNYKQYYHQMQIVV SSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQILVIRKSLGGEQDGSDGRGVGISRLRNVDQQVRQQRALQRLGVMQPHTWRPQRGLPDSSVLVL RAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSNWFINARVRLWKPMVEEMYKEEFTDALQENDPNQSSENTPEITEIQELQTESSSNNGHVPGVASSSM RQNTVAHGGDRFMMVTDMTRNGNGGMSLTLGIQNSDARGDVPMSGGIDNYKNTISGTDLQYLNSRNHQHQIGSSQLLHDFIA
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1445/1446 (99.9%)（アミノ酸配列で481/482 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G16 ATGGCCACTTATTACAAAACTGGCTCAAGTGAGATTTATTCCAGACCAGAATTTGTCCCTGGAAACGCAATGAACTACACAAATTCTTTCACAGAGACAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 ATGGCCACTTATTACAAAACTGGCTCAAGTGAGATTTATTCCAGACCAGAATTTGTCCCTGGAAACGCAATGAACTACACAAATTCTTTCACAGAGACAT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G16 TTCCTAGAGATTCAACTAATAATGTGTCACCTTCAAAAGAGATTCAAGTGTTGTCAAGCCTTGGTGGAGTTTCACAAATGGTTGAGATTCAAGATTCTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 TTCCTAGAGATTCAACTAATAATGTGTCACCTTCAAAAGAGATTCAAGTGTTGTCAAGCCTTGGTGGAGTTTCACAAATGGTTGAGATTCAAGATTCTGG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G16 TTCTTGGAGAGATCAAGAAGACAATGACAGGAATCGCTTCCCGGTGATGAGGCGTCTTGGCCTCAGCTCGCAGATTGAGACATCGAGAGGCAATAATAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 TTCTTGGAGAGATCAAGAAGACAATGACAGGAATCGCTTCCCGGTGATGAGGCGTCTTGGCCTCAGCTCGCAGATTGAGACATCGAGAGGCAATAATAAC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G16 AATGAGTATGCAACACAGGTTGTTTCGGGATTTACTCGAACCATTCACAACTCAAAGTATCTCAAAGCTGCTCAAGAGCTTCTTGATGAAACTGTTAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 AATGAGTATGCAACACAGGTTGTTTCGGGATTTACTCGAACCATTCACAACTCAAAGTATCTCAAAGCTGCTCAAGAGCTTCTTGATGAAACTGTTAATG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G16 TTAAGAAAGCTCTAAAGCAGTTTCAGCCAGAGGGAGATAAGATTAATGAAGTGAAAGAGAAGAATCTTCAGACGAATACTGCTGAAATCCCTCAAGCAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 TTAAGAAAGCTCTAAAGCAGTTTCAGCCAGAGGGAGATAAGATTAATGAAGTGAAAGAGAAGAATCTTCAGACGAATACTGCTGAAATCCCTCAAGCAGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G16 GAGGCAAGAATTGCAGAGCAAGTTGTCGAAACTTTTATCGATATTAGACGAGGTGGATAGAAATTACAAGCAGTATTACCATCAGATGCAGATAGTCGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 GAGGCAAGAATTGCAGAGCAAGTTGTCGAAACTTTTATCGATATTAGACGAGGTGGATAGAAATTACAAGCAGTATTACCATCAGATGCAGATAGTCGTG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G16 TCGTCTTTCGATGTAATAGCCGGATGTGGAGCAGCCAAACCATACACAGCCCTTGCGCTTCAGACCATCTCGAGGCATTTCCGTTGCTTAAGGGATGCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 TCGTCTTTCGATGTAATAGCCGGATGTGGAGCAGCCAAACCATACACAGCCCTTGCGCTTCAGACCATCTCGAGGCATTTCCGTTGCTTAAGGGATGCGA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G16 TATCCGGACAAATCTTGGTGATAAGGAAAAGTTTAGGAGGGGAACAGGATGGATCAGATGGGAGAGGAGTGGGGATAAGCAGGTTAAGGAATGTTGATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 TATCCGGACAAATCTTGGTGATAAGGAAAAGTTTAGGAGGGGAACAGGATGGATCAGATGGGAGAGGAGTGGGGATAAGCAGGTTAAGGAATGTTGATCA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G16 ACAGGTAAGGCAACAAAGAGCGTTGCAGCGGTTAGGTGTGATGCAACCTCACACTTGGCGGCCTCAACGCGGTTTACCAGATTCTTCTGTTTTGGTTCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 ACAGGTAAGGCAACAAAGAGCGTTGCAGCGGTTAGGTGTGATGCAACCTCACACTTGGCGGCCTCAACGCGGTTTACCAGATTCTTCTGTTTTGGTTCTC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G16 CGTGCTTGGCTATTTGAGCATTTCCTCCACCCTTATCCAAAGGATTCAGACAAGATCATGCTCGCTAGACAAACGGGGTTGAGCCGAGGCCAGGTATCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 CGTGCTTGGCTATTTGAGCATTTCCTCCACCCTTATCCAAAGGATTCAGACAAGATCATGCTCGCTAGACAAACGGGGTTGAGCCGAGGCCAGGTATCGA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G16 ACTGGTTCATAAATGCGCGTGTGCGTCTCTGGAAACCGATGGTGGAGGAGATGTACAAGGAGGAATTCACAGATGCATTGCAGGAGAATGATCCCAACCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 ACTGGTTCATAAATGCGCGTGTGCGTCTCTGGAAACCGATGGTGGAGGAGATGTACAAGGAGGAATTCACAGATGCATTGCAGGAGAATGATCCCAACCA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G16 GTCTTCTGAAAACACACCAGAAATCACCGAGATTCAAGAGCTGCAAACTGAGTCTAGTTCCAACAATGGGCATGTACCTGGTGTGGCAAGCAGTAGCATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 GTCTTCTGAAAACACACCAGAAATCACCGAGATTCAAGAGCTGCAAACTGAGTCTAGTTCCAACAATGGGCATGTACCTGGTGTGGCAAGCAGTAGCATG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G16 AGACAAAACACAGTGGCCCATGGTGGTGACCGGTTCATGATGGTGACTGACATGACAAGAAATGGTAATGGTGGGATGTCTTTAACGTTGGGGATTCAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 AGACAAAACACAGTGGCCCATGGTGGTGACCGGTTCATGATGGTGACTGACATGACAAGAAATGGTAATGGTGGGATGTCTTTAACGTTGGGGATTCAGA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT2G16 ATTCCGATGCTCGTGGCGATGTTCCTATGTCCGGTGGGATAGATAACTACAAGAATACCATCTCGGGAACCGATCTACAGTACTTAAACTCTCGCAACCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 ATTCCGATGCTCGTGGCGATGTTCCTATGTCCGGTGGGATAGATAACTACAAGAATACCATCTCGGGAACCGATCTACAGTACTTAAACTCTCGCAACCA 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 AT2G16 CCAGCACCAGATTGGCTCTTCACAATTGTTGCATGATTTTGTAGCT :::::::::::::::::::::::::::::::::::::::: ::::: RE_053 CCAGCACCAGATTGGCTCTTCACAATTGTTGCATGATTTTATAGCT 1410 1420 1430 1440 10 20 30 40 50 60 70 80 90 100 AT2G16 MATYYKTGSSEIYSRPEFVPGNAMNYTNSFTETFPRDSTNNVSPSKEIQVLSSLGGVSQMVEIQDSGSWRDQEDNDRNRFPVMRRLGLSSQIETSRGNNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 MATYYKTGSSEIYSRPEFVPGNAMNYTNSFTETFPRDSTNNVSPSKEIQVLSSLGGVSQMVEIQDSGSWRDQEDNDRNRFPVMRRLGLSSQIETSRGNNN 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G16 NEYATQVVSGFTRTIHNSKYLKAAQELLDETVNVKKALKQFQPEGDKINEVKEKNLQTNTAEIPQAERQELQSKLSKLLSILDEVDRNYKQYYHQMQIVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 NEYATQVVSGFTRTIHNSKYLKAAQELLDETVNVKKALKQFQPEGDKINEVKEKNLQTNTAEIPQAERQELQSKLSKLLSILDEVDRNYKQYYHQMQIVV 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G16 SSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQILVIRKSLGGEQDGSDGRGVGISRLRNVDQQVRQQRALQRLGVMQPHTWRPQRGLPDSSVLVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 SSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQILVIRKSLGGEQDGSDGRGVGISRLRNVDQQVRQQRALQRLGVMQPHTWRPQRGLPDSSVLVL 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G16 RAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSNWFINARVRLWKPMVEEMYKEEFTDALQENDPNQSSENTPEITEIQELQTESSSNNGHVPGVASSSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_053 RAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSNWFINARVRLWKPMVEEMYKEEFTDALQENDPNQSSENTPEITEIQELQTESSSNNGHVPGVASSSM 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 AT2G16 RQNTVAHGGDRFMMVTDMTRNGNGGMSLTLGIQNSDARGDVPMSGGIDNYKNTISGTDLQYLNSRNHQHQIGSSQLLHDFVA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: RE_053 RQNTVAHGGDRFMMVTDMTRNGNGGMSLTLGIQNSDARGDVPMSGGIDNYKNTISGTDLQYLNSRNHQHQIGSSQLLHDFIA 410 420 430 440 450 460 470 480

このページのTOPに戻る