| Code name | RE_0540 | |||
|---|---|---|---|---|
| Locus | AT2G22800 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.30%一致 | |||
| comment | 0520_third_0540_FR_25 | |||
| sequence |
>RE_0540_822bp ATGGGTTTTGATGATACATGCAACACAGGTCTTGTTCTTGGATTAGGTCCCTCACCAATTCCAAATAATTACAATAGTACCATCAGACAATCCTCCGTTT ACAAGCTCGAGCCGTCGTTGACTCTATGCCTCTCGGGCGATCCCTCGGTTACCGTGGTGACCGGAGCTGACCAGCTATGCCGTCAGACGTCATCTCACAG CGGAGTCTCTTCTTTCTCAAGCGGGAGGGTGGTGAAAAGAGAGAGAGACGGTGGCGAAGAGTCGCCGGAGGAGGAAGAGATGACGGAGAGAGTTATAAGT GATTACCATGAAGATGAAGAAGGTATTAGTGCTAGAAAAAAACTTAGGCTTACGAAACAACAATCTGCTCTTCTTGAGGAAAGCTTCAAGGATCATAGCA CCCTTAATCCCAAACAAAAGCAAGTTCTGGCTAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAGGACAAAGCT GAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAGAAGTGTTGTGAAACATTAGCAGATGAGAACATAAGACTTCAGAAAGAGATTCAAGAACTCAAAACC CTAAAATTGACTCAGCCCTTTTACATGCACATGCCTGCATCGACTCTAACGAAGTGTCCTTCTTGTGAGAGAATCGGCGGCGGCGGCGGGGGTAATGGAG GAGGAGGTGGCGGCAGCGGGGCTATTGCAGTGATTGTAAATGGAAGCACGGCCAAAGGAGCTTTCTCTATCTCCTCAAAGCCTCACTTCTTCAACCCTTT TACTAACCCATCTGCAGCTTGT >RE_0540_translated MGFDDTCNTGLVLGLGPSPIPNNYNSTIRQSSVYKLEPSLTLCLSGDPSVTVVTGADQLCRQTSSHSGVSSFSSGRVVKRERDGGEESPEEEEMTERVIS DYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKT LKLTQPFYMHMPASTLTKCPSCERIGGGGGGNGGGGGGSGAIAVIVNGSTAKGAFSISSKPHFFNPFTNPSAAC |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 817/822 (99.4%)（アミノ酸配列で272/274 (99.3%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G22 ATGGGTTTTGATGATACATGCAACACAGGTCTTGTTCTTGGATTAGGTCCCTCACCAATTCCAAATAATTACAATAGTACCATCAGACAATCCTCCGTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_054 ATGGGTTTTGATGATACATGCAACACAGGTCTTGTTCTTGGATTAGGTCCCTCACCAATTCCAAATAATTACAATAGTACCATCAGACAATCCTCCGTTT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G22 ACAAGCTCGAGCCGTCGTTGACTCTATGCCTCTCGGGCGATCCCTCGGTTACCGTGGTGACCGGAGCTGACCAGCTATGCCGTCAGACGTCATCTCACAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_054 ACAAGCTCGAGCCGTCGTTGACTCTATGCCTCTCGGGCGATCCCTCGGTTACCGTGGTGACCGGAGCTGACCAGCTATGCCGTCAGACGTCATCTCACAG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT2G22 CGGAGTCTCTTCTTTCTCAAGCGGGAGGGTGGTGAAAAGAGAGAGAGACGGTGGCGAAGAGTCGCCGGAGGAGGAAGAGATGACGGAGAGAGTTATAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_054 CGGAGTCTCTTCTTTCTCAAGCGGGAGGGTGGTGAAAAGAGAGAGAGACGGTGGCGAAGAGTCGCCGGAGGAGGAAGAGATGACGGAGAGAGTTATAAGT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT2G22 GATTACCATGAAGATGAAGAAGGTATTAGTGCTAGAAAAAAACTTAGGCTTACGAAACAACAATCTGCTCTTCTTGAGGAAAGCTTCAAGGATCATAGCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_054 GATTACCATGAAGATGAAGAAGGTATTAGTGCTAGAAAAAAACTTAGGCTTACGAAACAACAATCTGCTCTTCTTGAGGAAAGCTTCAAGGATCATAGCA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT2G22 CCCTTAATCCCAAACAAAAGCAAGTTCTGGCTAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAGGACAAAGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_054 CCCTTAATCCCAAACAAAAGCAAGTTCTGGCTAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAGGACAAAGCT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT2G22 GAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAGAAGTGTTGTGAAACATTAGCAGATGAGAACATAAGACTTCAGAAAGAGATTCAAGAACTCAAAACC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_054 GAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAGAAGTGTTGTGAAACATTAGCAGATGAGAACATAAGACTTCAGAAAGAGATTCAAGAACTCAAAACC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT2G22 CTAAAATTGACTCAGCCCTTTTACATGCACATGCCTGCATCGACTCTAACGAAGTGTCCTTCTTGTGAGAGAATCGGCGGCGGCGGCGGGGGTAATGGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_054 CTAAAATTGACTCAGCCCTTTTACATGCACATGCCTGCATCGACTCTAACGAAGTGTCCTTCTTGTGAGAGAATCGGCGGCGGCGGCGGGGGTAATGGAG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT2G22 GAGGAGGTGGCGGCAGCGGGGCTACCGCGGTGATTGTAGATGGAAGTACGGCCAAAGGAGCTTTCTCTATCTCCTCAAAGCCTCACTTCTTCAACCCTTT
:::::::::::::::::::::::: :: ::::::::: ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_054 GAGGAGGTGGCGGCAGCGGGGCTATTGCAGTGATTGTAAATGGAAGCACGGCCAAAGGAGCTTTCTCTATCTCCTCAAAGCCTCACTTCTTCAACCCTTT
710 720 730 740 750 760 770 780 790 800
810 820
AT2G22 TACTAACCCATCTGCAGCTTGT
::::::::::::::::::::::
RE_054 TACTAACCCATCTGCAGCTTGT
810 820
10 20 30 40 50 60 70 80 90 100
AT2G22 MGFDDTCNTGLVLGLGPSPIPNNYNSTIRQSSVYKLEPSLTLCLSGDPSVTVVTGADQLCRQTSSHSGVSSFSSGRVVKRERDGGEESPEEEEMTERVIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_054 MGFDDTCNTGLVLGLGPSPIPNNYNSTIRQSSVYKLEPSLTLCLSGDPSVTVVTGADQLCRQTSSHSGVSSFSSGRVVKRERDGGEESPEEEEMTERVIS
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G22 DYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_054 DYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270
AT2G22 LKLTQPFYMHMPASTLTKCPSCERIGGGGGGNGGGGGGSGATAVIVDGSTAKGAFSISSKPHFFNPFTNPSAAC
::::::::::::::::::::::::::::::::::::::::: ::::.:::::::::::::::::::::::::::
RE_054 LKLTQPFYMHMPASTLTKCPSCERIGGGGGGNGGGGGGSGAIAVIVNGSTAKGAFSISSKPHFFNPFTNPSAAC
210 220 230 240 250 260 270
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