◆◆◆RE_0541 detail◆◆◆

Code name	RE_0541
Locus	AT2G23760
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0520_20080115_0541_FRW1W2_5555
sequence	>RE_0541_1881bp ATGGGTTTAGCTACTACAACTTCTTCTATGTCACAAGATTATCATCATCACCAAGGAATCTTTTCCTTCTCTAATGGATTCCACCGATCATCATCAACCA CTCATCAAGAGGAAGTAGATGAATCCGCCGTCGTCTCCGGTGCTCAAATTCCGGTTTATGAAACCGCCGGAATGTTGTCTGAAATGTTTGCTTACCCTGG CGGAGGTGGCGGCGGTTCCGGTGGAGAGATTCTTGATCAGTCTACTAAACAGTTGCTAGAGCAACAAAACCGTCACAACAACAACAATAACTCAACTCTT CATATGTTATTACCAAATCATCATCAAGGTTTTGCTTTCACCGACGAAAACACTATGCAGCCGCAGCAACAACAACACTTTACATGGCCATCTTCCTCCT CCGATCATCATCAAAACCGAGATATGATCGGAACCGTCCACGTGGAAGGAGGAAAGGGTTTGTCTTTATCTCTCTCATCTTCATTAGCCGCAGCTAAAGC CGAGGAATATAGAAGCATTTATTGTGCAGCCGTTGATGGAACTTCTTCTTCTTCTAACGCATCCGCTCATCATCATCAATTCAATCAGTTCAAGAATCTT CTTCTTGAGAATTCTTCTTCTCAACATCATCACCATCAAGTTGTTGGACATTTTGGTTCATCATCATCATCTCCCATGGCGGCTTCTTCATCCATTGGAG GGATCTACACGTTGAGGAATTCGAAATATACGAAACCGGCTCAAGAGTTGTTGGAAGAGTTTTGTAGTGTTGGAAGAGGACATTTCAAGAAGAACAAACT TAGTAGGAACAACTCAAACCCTAATACTACCGGTGGAGGAGGAGGCGGAGGGTCCTCGTCATCGGCCGGAACAGCTAATGATAGTCCTCCTTTGTCTCCG GCTGATCGGATTGAACATCAAAGAAGAAAAGTCAAGCTACTATCTATGCTTGAAGAGGTGGACCGACGGTACAACCACTACTGCGAACAAATGCAAATGG TAGTGAACTCATTCGACCAAGTAATGGGTTACGGCGCGGCGGTTCCGTACACGACATTAGCTCAAAAGGCAATGTCTAGGCATTTCCGGTGTTTGAAAGA CGCGGTAGCGGTTCAGCTTAAACGCAGCTGTGAGCTTCTAGGGGATAAAGAGGCGGCAGGGGCTGCATCCTCGGGGTTAACCAAAGGGGAAACGCCGCGA TTGCGTTTGCTAGAGCAGAGTTTGCGTCAGCAACGAGCGTTTCATCATATGGGTATGATGGAGCAAGAGGCATGGAGACCGCAACGTGGTTTGCCTGAAC GCTCCGTTAATATCCTTAGAGCTTGGCTATTCGAGCATTTTCTTAATCCGTACCCAAGCGATGCTGATAAGCACCTCTTAGCACGACAGACTGGTTTATC CAGAAATCAGGTGTCAAATTGGTTCATAAATGCTAGGGTTCGCCTATGGAAACCAATGGTGGAAGAGATGTATCAACAAGAAGCAAAAGAAAGAGAAGAA GCAGAAGAAGAAAATGAAAATCAACAACAACAAAGAAGACAGCAACAAACAAACAACAACGACACGAAACCCAACAACAATGAAAACAACTTCACTGTCA TAACCGCACAAACTCCAACGACGATGACATCGACACATCACGAAAACGACTCTTCATTCCTCTCTTCCGTCGCCGCCGCTTCTCACGGCGGTTCAGACGC GTTCACCGTCGCCACGTGTCAGCAAGACGTCAGTGACTTCCACGTCGACGGAGATGGTGTGAACGTCATAAGATTCGGGACCAAACAGACTGGTGACGTG TCTCTTACGCTTGGCCTACGCCACTCTGGCAATATTCCTGATAAGAACACTTCTTTCTCCGTTAGAGACTTTGGAGATTTT >RE_0541_translated MGLATTTSSMSQDYHHHQGIFSFSNGFHRSSSTTHQEEVDESAVVSGAQIPVYETAGMLSEMFAYPGGGGGGSGGEILDQSTKQLLEQQNRHNNNNNSTL HMLLPNHHQGFAFTDENTMQPQQQQHFTWPSSSSDHHQNRDMIGTVHVEGGKGLSLSLSSSLAAAKAEEYRSIYCAAVDGTSSSSNASAHHHQFNQFKNL LLENSSSQHHHHQVVGHFGSSSSSPMAASSSIGGIYTLRNSKYTKPAQELLEEFCSVGRGHFKKNKLSRNNSNPNTTGGGGGGGSSSSAGTANDSPPLSP ADRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQLKRSCELLGDKEAAGAASSGLTKGETPR LRLLEQSLRQQRAFHHMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKEREE AEEENENQQQQRRQQQTNNNDTKPNNNENNFTVITAQTPTTMTSTHHENDSSFLSSVAAASHGGSDAFTVATCQQDVSDFHVDGDGVNVIRFGTKQTGDV SLTLGLRHSGNIPDKNTSFSVRDFGDF
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1880/1881 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G23 ATGGGTTTAGCTACTACAACTTCTTCTATGTCACAAGATTATCATCATCACCAAGGAATCTTTTCCTTCTCTAATGGATTCCACCGATCATCATCAACCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 ATGGGTTTAGCTACTACAACTTCTTCTATGTCACAAGATTATCATCATCACCAAGGAATCTTTTCCTTCTCTAATGGATTCCACCGATCATCATCAACCA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G23 CTCATCAAGAGGAAGTAGATGAATCCGCCGTCGTCTCCGGTGCTCAAATTCCGGTTTATGAAACCGCCGGAATGTTGTCTGAAATGTTTGCTTACCCTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CTCATCAAGAGGAAGTAGATGAATCCGCCGTCGTCTCCGGTGCTCAAATTCCGGTTTATGAAACCGCCGGAATGTTGTCTGAAATGTTTGCTTACCCTGG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G23 CGGAGGTGGCGGCGGTTCCGGTGGAGAGATTCTTGATCAGTCTACTAAACAGTTGCTAGAGCAACAAAACCGTCACAACAACAACAATAACTCAACTCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CGGAGGTGGCGGCGGTTCCGGTGGAGAGATTCTTGATCAGTCTACTAAACAGTTGCTAGAGCAACAAAACCGTCACAACAACAACAATAACTCAACTCTT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G23 CATATGTTATTACCAAATCATCATCAAGGTTTTGCTTTCACCGACGAAAACACTATGCAGCCGCAGCAACAACAACACTTTACATGGCCATCTTCCTCCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CATATGTTATTACCAAATCATCATCAAGGTTTTGCTTTCACCGACGAAAACACTATGCAGCCGCAGCAACAACAACACTTTACATGGCCATCTTCCTCCT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G23 CCGATCATCATCAAAACCGAGATATGATCGGAACCGTCCACGTGGAAGGAGGAAAGGGTTTGTCTTTATCTCTCTCATCTTCATTAGCCGCAGCTAAAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CCGATCATCATCAAAACCGAGATATGATCGGAACCGTCCACGTGGAAGGAGGAAAGGGTTTGTCTTTATCTCTCTCATCTTCATTAGCCGCAGCTAAAGC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G23 CGAGGAATATAGAAGCATTTATTGTGCAGCCGTTGATGGAACTTCTTCTTCTTCTAACGCATCCGCTCATCATCATCAATTCAATCAGTTCAAGAATCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CGAGGAATATAGAAGCATTTATTGTGCAGCCGTTGATGGAACTTCTTCTTCTTCTAACGCATCCGCTCATCATCATCAATTCAATCAGTTCAAGAATCTT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G23 CTTCTTGAGAATTCTTCTTCTCAACATCATCACCATCAAGTTGTTGGACATTTTGGTTCATCATCATCATCTCCCATGGCGGCTTCTTCATCCATTGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CTTCTTGAGAATTCTTCTTCTCAACATCATCACCATCAAGTTGTTGGACATTTTGGTTCATCATCATCATCTCCCATGGCGGCTTCTTCATCCATTGGAG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G23 GGATCTACACGTTGAGGAATTCGAAATATACGAAACCGGCTCAAGAGTTGTTGGAAGAGTTTTGTAGTGTTGGAAGAGGACATTTCAAGAAGAACAAACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GGATCTACACGTTGAGGAATTCGAAATATACGAAACCGGCTCAAGAGTTGTTGGAAGAGTTTTGTAGTGTTGGAAGAGGACATTTCAAGAAGAACAAACT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G23 TAGTAGGAACAACTCAAACCCTAATACTACCGGTGGAGGAGGAGGCGGAGGGTCCTCGTCATCGGCCGGAACAGCTAATGATAGTCCTCCTTTGTCTCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 TAGTAGGAACAACTCAAACCCTAATACTACCGGTGGAGGAGGAGGCGGAGGGTCCTCGTCATCGGCCGGAACAGCTAATGATAGTCCTCCTTTGTCTCCG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G23 GCTGATCGGATTGAACATCAAAGAAGAAAAGTCAAGCTACTATCTATGCTTGAAGAGGTGGACCGACGGTACAACCACTACTGCGAACAAATGCAAATGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GCTGATCGGATTGAACATCAAAGAAGAAAAGTCAAGCTACTATCTATGCTTGAAGAGGTGGACCGACGGTACAACCACTACTGCGAACAAATGCAAATGG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G23 TAGTGAACTCATTCGACCAAGTAATGGGTTACGGCGCGGCGGTTCCGTACACGACATTAGCTCAAAAGGCAATGTCTAGGCATTTCCGGTGTTTGAAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 TAGTGAACTCATTCGACCAAGTAATGGGTTACGGCGCGGCGGTTCCGTACACGACATTAGCTCAAAAGGCAATGTCTAGGCATTTCCGGTGTTTGAAAGA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G23 CGCGGTAGCGGTTCAGCTTAAACGCAGCTGTGAGCTTCTAGGGGATAAAGAGGCGGCAGGGGCTGCATCCTCGGGGTTAACCAAAGGGGAAACGCCGCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CGCGGTAGCGGTTCAGCTTAAACGCAGCTGTGAGCTTCTAGGGGATAAAGAGGCGGCAGGGGCTGCATCCTCGGGGTTAACCAAAGGGGAAACGCCGCGA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G23 TTGCGTTTGCTAGAGCAGAGTTTGCGTCAGCAACGAGCGTTTCATCATATGGGTATGATGGAGCAAGAGGCATGGAGACCGCAACGTGGTTTGCCTGAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 TTGCGTTTGCTAGAGCAGAGTTTGCGTCAGCAACGAGCGTTTCATCATATGGGTATGATGGAGCAAGAGGCATGGAGACCGCAACGTGGTTTGCCTGAAC 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT2G23 GCTCCGTTAATATCCTTAGAGCTTGGCTATTCGAGCATTTTCTTAATCCGTACCCAAGCGATGCTGATAAGCACCTCTTAGCACGACAGACTGGTTTATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GCTCCGTTAATATCCTTAGAGCTTGGCTATTCGAGCATTTTCTTAATCCGTACCCAAGCGATGCTGATAAGCACCTCTTAGCACGACAGACTGGTTTATC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT2G23 CAGAAATCAGGTGTCAAATTGGTTCATAAATGCTAGGGTTCGCCTATGGAAACCAATGGTGGAAGAGATGTATCAACAAGAAGCAAAAGAAAGAGAAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CAGAAATCAGGTGTCAAATTGGTTCATAAATGCTAGGGTTCGCCTATGGAAACCAATGGTGGAAGAGATGTATCAACAAGAAGCAAAAGAAAGAGAAGAA 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT2G23 GCAGAAGAAGAAAATGAAAATCAACAACAACAAAGAAGACAGCAACAAACAAACAACAACGACACGAAACCCAACAACAATGAAAACAACTTCACTGTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GCAGAAGAAGAAAATGAAAATCAACAACAACAAAGAAGACAGCAACAAACAAACAACAACGACACGAAACCCAACAACAATGAAAACAACTTCACTGTCA 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT2G23 TAACCGCACAAACTCCAACGACGATGACATCGACACATCACGAAAACGACTCTTCATTCCTCTCTTCCGTCGCCGCCGCTTCTCACGGCGGTTCAGACGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 TAACCGCACAAACTCCAACGACGATGACATCGACACATCACGAAAACGACTCTTCATTCCTCTCTTCCGTCGCCGCCGCTTCTCACGGCGGTTCAGACGC 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT2G23 GTTCACCGTCGCCACGTGTCAGCAAGACGTCAGTGACTTCCACGTCGACGGAGATGGTGTGAACGTCATAAGATTCGGGACCAAACAGACTGGTGACGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GTTCACCGTCGCCACGTGTCAGCAAGACGTCAGTGACTTCCACGTCGACGGAGATGGTGTGAACGTCATAAGATTCGGGACCAAACAGACTGGTGACGTG 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 AT2G23 TCTCTTACGCTTGGTCTACGCCACTCTGGCAATATTCCTGATAAGAACACTTCTTTCTCCGTTAGAGACTTTGGAGATTTT :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 TCTCTTACGCTTGGCCTACGCCACTCTGGCAATATTCCTGATAAGAACACTTCTTTCTCCGTTAGAGACTTTGGAGATTTT 1810 1820 1830 1840 1850 1860 1870 1880 10 20 30 40 50 60 70 80 90 100 AT2G23 MGLATTTSSMSQDYHHHQGIFSFSNGFHRSSSTTHQEEVDESAVVSGAQIPVYETAGMLSEMFAYPGGGGGGSGGEILDQSTKQLLEQQNRHNNNNNSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 MGLATTTSSMSQDYHHHQGIFSFSNGFHRSSSTTHQEEVDESAVVSGAQIPVYETAGMLSEMFAYPGGGGGGSGGEILDQSTKQLLEQQNRHNNNNNSTL 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G23 HMLLPNHHQGFAFTDENTMQPQQQQHFTWPSSSSDHHQNRDMIGTVHVEGGKGLSLSLSSSLAAAKAEEYRSIYCAAVDGTSSSSNASAHHHQFNQFKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 HMLLPNHHQGFAFTDENTMQPQQQQHFTWPSSSSDHHQNRDMIGTVHVEGGKGLSLSLSSSLAAAKAEEYRSIYCAAVDGTSSSSNASAHHHQFNQFKNL 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G23 LLENSSSQHHHHQVVGHFGSSSSSPMAASSSIGGIYTLRNSKYTKPAQELLEEFCSVGRGHFKKNKLSRNNSNPNTTGGGGGGGSSSSAGTANDSPPLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 LLENSSSQHHHHQVVGHFGSSSSSPMAASSSIGGIYTLRNSKYTKPAQELLEEFCSVGRGHFKKNKLSRNNSNPNTTGGGGGGGSSSSAGTANDSPPLSP 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G23 ADRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQLKRSCELLGDKEAAGAASSGLTKGETPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 ADRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQLKRSCELLGDKEAAGAASSGLTKGETPR 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G23 LRLLEQSLRQQRAFHHMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKEREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 LRLLEQSLRQQRAFHHMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKEREE 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G23 AEEENENQQQQRRQQQTNNNDTKPNNNENNFTVITAQTPTTMTSTHHENDSSFLSSVAAASHGGSDAFTVATCQQDVSDFHVDGDGVNVIRFGTKQTGDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 AEEENENQQQQRRQQQTNNNDTKPNNNENNFTVITAQTPTTMTSTHHENDSSFLSSVAAASHGGSDAFTVATCQQDVSDFHVDGDGVNVIRFGTKQTGDV 510 520 530 540 550 560 570 580 590 600 610 620 AT2G23 SLTLGLRHSGNIPDKNTSFSVRDFGDF ::::::::::::::::::::::::::: RE_054 SLTLGLRHSGNIPDKNTSFSVRDFGDF 610 620

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