◆◆◆RE_0543 detail◆◆◆

Code name	RE_0543
Locus	AT2G27990
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0318_アミノ酸配列100%一致
sequence	>RE_0543_1752bp ATGGATATGATAAAACCAGATTTTCAACAAATCCGAAGAGATAAGTTCAGAGTTGAGCAAATGAATGATTTTCCCAACACTTGGACTCAGCAGCAGCATC AGAACATCAGAATTCCCAACAACCTTGATTTGATTGGTATCTTACAGAACCAGATTTCCGTACCGGTTCAAACCGATTTGTATCAAGATTCTGCCGCAAC CTTTATGAACATGCCTCAGTCGATACATAGAGACCCACAAGGCCCTAGTAATTGGAGAATCAGTGATTTGTCACAACCTAGTACCGTGAATCACGGATAT GATCAGGCTGGTATTAGGCCAAACAACGTTGCAGATTTGTTGTCCGATCATTTCAGTTCTCGAAACCAAATATTGGACCGTCCTCTTTATGTCGGCCGGG ACTCTATTCCTCAGTCTAGCATGATTAGGAGAAGTGAAGTTTCTTGTCTAGACGATAATCAAAAGGGTTGTGTAACGGTGGCTTGTTCGGGTACTGGTAA TGAGATTTTAAGGAGCAGTTATGATCAAGGTTCTTCTTCTGGAAGTTACCGAGGAGAATTTTCGTTTCTCCCAAGTTTGGAGAATCAATCAGTTGCGCAC AATGCAAGCAACTGGAACCACGGACCAGTGAATGTTACTGCCACTTCTCATACTAATAGTAAGAAAGGCTTTCCACTCTCACTTTTGTCTGATATCCCTC CATCTAGAGACGTTGGAAATGCAGCTGTTTTGTCAACAATGAATATTCACGGCCCACTCGGGCCTTTCACGGGATATGCATCGATACTGAAGAGTTCGAG GTTCTTGGAGCCGGCTCAGAAAATGTTAGAAGAGTTTTGTATCTCTTATGCTTCAAAGATTATTAGTAGAAGTGAATCTACTTCCATGGAGGATGATGAT GATGATGATGATAACTTGTCAGGGTTTAGTAGTTCTTCTGAGCCATTAGAACCCAAGAATAGACTAAAGAAAGCAAAACTTCTCTTTCTGCAAGAAGAGG TTTGCAAGTGGTACAAACTATATAATCATCAGTTGCAAACAGTTATGTCTTCCTTCAATACAGTGGCTGGTCTAAACACCGCAACACCGTATATCTCGTT GGCTCTCAAACGGACTTCACGAAGTTTCAAGGCCCTTAGAACCGCAATAGCTGAACATGTGAAGCAAATCTCAAGTCACTCATCAAACGGTAACAACAAC AACCGATTCCAAAAGAGGCAAAGATCTTTGATTGGTAACAATGTCGGGTTTGAATCTCAACAACAACATATCTGGAGGCCTCAAAGGGGATTGCCCGAAC GTGCAGTGGCTGTTCTTAGAGCATGGCTCTTTGACCATTTTCTTCATCCGTACCCCACTGATTCTGATAAGCAGATGCTAGCCACTCAAACTGGTCTCTC TCGTAACCAGGTATCAAATTGGTTCATAAACGCCCGTGTGCGATTATGGAAACCTATGGTGGAAGAAATACACACACTTGAGACCAAAGCAATTAAAAAT GCAGATACTAGTCACAACATTGAGCCATCAAATAGACCGAATACTGTTAGCAGTCCGAGCCATGAACAAACGCTAACGGGCCTCTCCGGGACAAAACGGT CGAGGTTAGAGTACATGGACATGGTGGGGTTCAATAGAGGGAACGTGTCACTCACGTTAGAGCTTAGGCGTGGTGTGGACAATGTTATCCAAACGCAGAC TCAGGATCATCAGTTTGGAACTGGAAGCCAAATGTTTCATGACTTTGTGGGT >RE_0543_translated MDMIKPDFQQIRRDKFRVEQMNDFPNTWTQQQHQNIRIPNNLDLIGILQNQISVPVQTDLYQDSAATFMNMPQSIHRDPQGPSNWRISDLSQPSTVNHGY DQAGIRPNNVADLLSDHFSSRNQILDRPLYVGRDSIPQSSMIRRSEVSCLDDNQKGCVTVACSGTGNEILRSSYDQGSSSGSYRGEFSFLPSLENQSVAH NASNWNHGPVNVTATSHTNSKKGFPLSLLSDIPPSRDVGNAAVLSTMNIHGPLGPFTGYASILKSSRFLEPAQKMLEEFCISYASKIISRSESTSMEDDD DDDDNLSGFSSSSEPLEPKNRLKKAKLLFLQEEVCKWYKLYNHQLQTVMSSFNTVAGLNTATPYISLALKRTSRSFKALRTAIAEHVKQISSHSSNGNNN NRFQKRQRSLIGNNVGFESQQQHIWRPQRGLPERAVAVLRAWLFDHFLHPYPTDSDKQMLATQTGLSRNQVSNWFINARVRLWKPMVEEIHTLETKAIKN ADTSHNIEPSNRPNTVSSPSHEQTLTGLSGTKRSRLEYMDMVGFNRGNVSLTLELRRGVDNVIQTQTQDHQFGTGSQMFHDFVG
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1751/1752 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G27 ATGGATATGATAAAACCAGATTTTCAACAAATCCGAAGAGATAAGTTTAGAGTTGAGCAAATGAATGATTTTCCCAACACTTGGACTCAGCAGCAGCATC ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 ATGGATATGATAAAACCAGATTTTCAACAAATCCGAAGAGATAAGTTCAGAGTTGAGCAAATGAATGATTTTCCCAACACTTGGACTCAGCAGCAGCATC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G27 AGAACATCAGAATTCCCAACAACCTTGATTTGATTGGTATCTTACAGAACCAGATTTCCGTACCGGTTCAAACCGATTTGTATCAAGATTCTGCCGCAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 AGAACATCAGAATTCCCAACAACCTTGATTTGATTGGTATCTTACAGAACCAGATTTCCGTACCGGTTCAAACCGATTTGTATCAAGATTCTGCCGCAAC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G27 CTTTATGAACATGCCTCAGTCGATACATAGAGACCCACAAGGCCCTAGTAATTGGAGAATCAGTGATTTGTCACAACCTAGTACCGTGAATCACGGATAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CTTTATGAACATGCCTCAGTCGATACATAGAGACCCACAAGGCCCTAGTAATTGGAGAATCAGTGATTTGTCACAACCTAGTACCGTGAATCACGGATAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G27 GATCAGGCTGGTATTAGGCCAAACAACGTTGCAGATTTGTTGTCCGATCATTTCAGTTCTCGAAACCAAATATTGGACCGTCCTCTTTATGTCGGCCGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GATCAGGCTGGTATTAGGCCAAACAACGTTGCAGATTTGTTGTCCGATCATTTCAGTTCTCGAAACCAAATATTGGACCGTCCTCTTTATGTCGGCCGGG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G27 ACTCTATTCCTCAGTCTAGCATGATTAGGAGAAGTGAAGTTTCTTGTCTAGACGATAATCAAAAGGGTTGTGTAACGGTGGCTTGTTCGGGTACTGGTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 ACTCTATTCCTCAGTCTAGCATGATTAGGAGAAGTGAAGTTTCTTGTCTAGACGATAATCAAAAGGGTTGTGTAACGGTGGCTTGTTCGGGTACTGGTAA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G27 TGAGATTTTAAGGAGCAGTTATGATCAAGGTTCTTCTTCTGGAAGTTACCGAGGAGAATTTTCGTTTCTCCCAAGTTTGGAGAATCAATCAGTTGCGCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 TGAGATTTTAAGGAGCAGTTATGATCAAGGTTCTTCTTCTGGAAGTTACCGAGGAGAATTTTCGTTTCTCCCAAGTTTGGAGAATCAATCAGTTGCGCAC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G27 AATGCAAGCAACTGGAACCACGGACCAGTGAATGTTACTGCCACTTCTCATACTAATAGTAAGAAAGGCTTTCCACTCTCACTTTTGTCTGATATCCCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 AATGCAAGCAACTGGAACCACGGACCAGTGAATGTTACTGCCACTTCTCATACTAATAGTAAGAAAGGCTTTCCACTCTCACTTTTGTCTGATATCCCTC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G27 CATCTAGAGACGTTGGAAATGCAGCTGTTTTGTCAACAATGAATATTCACGGCCCACTCGGGCCTTTCACGGGATATGCATCGATACTGAAGAGTTCGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CATCTAGAGACGTTGGAAATGCAGCTGTTTTGTCAACAATGAATATTCACGGCCCACTCGGGCCTTTCACGGGATATGCATCGATACTGAAGAGTTCGAG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G27 GTTCTTGGAGCCGGCTCAGAAAATGTTAGAAGAGTTTTGTATCTCTTATGCTTCAAAGATTATTAGTAGAAGTGAATCTACTTCCATGGAGGATGATGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GTTCTTGGAGCCGGCTCAGAAAATGTTAGAAGAGTTTTGTATCTCTTATGCTTCAAAGATTATTAGTAGAAGTGAATCTACTTCCATGGAGGATGATGAT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G27 GATGATGATGATAACTTGTCAGGGTTTAGTAGTTCTTCTGAGCCATTAGAACCCAAGAATAGACTAAAGAAAGCAAAACTTCTCTTTCTGCAAGAAGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GATGATGATGATAACTTGTCAGGGTTTAGTAGTTCTTCTGAGCCATTAGAACCCAAGAATAGACTAAAGAAAGCAAAACTTCTCTTTCTGCAAGAAGAGG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G27 TTTGCAAGTGGTACAAACTATATAATCATCAGTTGCAAACAGTTATGTCTTCCTTCAATACAGTGGCTGGTCTAAACACCGCAACACCGTATATCTCGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 TTTGCAAGTGGTACAAACTATATAATCATCAGTTGCAAACAGTTATGTCTTCCTTCAATACAGTGGCTGGTCTAAACACCGCAACACCGTATATCTCGTT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G27 GGCTCTCAAACGGACTTCACGAAGTTTCAAGGCCCTTAGAACCGCAATAGCTGAACATGTGAAGCAAATCTCAAGTCACTCATCAAACGGTAACAACAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GGCTCTCAAACGGACTTCACGAAGTTTCAAGGCCCTTAGAACCGCAATAGCTGAACATGTGAAGCAAATCTCAAGTCACTCATCAAACGGTAACAACAAC 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G27 AACCGATTCCAAAAGAGGCAAAGATCTTTGATTGGTAACAATGTCGGGTTTGAATCTCAACAACAACATATCTGGAGGCCTCAAAGGGGATTGCCCGAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 AACCGATTCCAAAAGAGGCAAAGATCTTTGATTGGTAACAATGTCGGGTTTGAATCTCAACAACAACATATCTGGAGGCCTCAAAGGGGATTGCCCGAAC 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT2G27 GTGCAGTGGCTGTTCTTAGAGCATGGCTCTTTGACCATTTTCTTCATCCGTACCCCACTGATTCTGATAAGCAGATGCTAGCCACTCAAACTGGTCTCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GTGCAGTGGCTGTTCTTAGAGCATGGCTCTTTGACCATTTTCTTCATCCGTACCCCACTGATTCTGATAAGCAGATGCTAGCCACTCAAACTGGTCTCTC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT2G27 TCGTAACCAGGTATCAAATTGGTTCATAAACGCCCGTGTGCGATTATGGAAACCTATGGTGGAAGAAATACACACACTTGAGACCAAAGCAATTAAAAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 TCGTAACCAGGTATCAAATTGGTTCATAAACGCCCGTGTGCGATTATGGAAACCTATGGTGGAAGAAATACACACACTTGAGACCAAAGCAATTAAAAAT 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT2G27 GCAGATACTAGTCACAACATTGAGCCATCAAATAGACCGAATACTGTTAGCAGTCCGAGCCATGAACAAACGCTAACGGGCCTCTCCGGGACAAAACGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 GCAGATACTAGTCACAACATTGAGCCATCAAATAGACCGAATACTGTTAGCAGTCCGAGCCATGAACAAACGCTAACGGGCCTCTCCGGGACAAAACGGT 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT2G27 CGAGGTTAGAGTACATGGACATGGTGGGGTTCAATAGAGGGAACGTGTCACTCACGTTAGAGCTTAGGCGTGGTGTGGACAATGTTATCCAAACGCAGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 CGAGGTTAGAGTACATGGACATGGTGGGGTTCAATAGAGGGAACGTGTCACTCACGTTAGAGCTTAGGCGTGGTGTGGACAATGTTATCCAAACGCAGAC 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 AT2G27 TCAGGATCATCAGTTTGGAACTGGAAGCCAAATGTTTCATGACTTTGTGGGT :::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 TCAGGATCATCAGTTTGGAACTGGAAGCCAAATGTTTCATGACTTTGTGGGT 1710 1720 1730 1740 1750 10 20 30 40 50 60 70 80 90 100 AT2G27 MDMIKPDFQQIRRDKFRVEQMNDFPNTWTQQQHQNIRIPNNLDLIGILQNQISVPVQTDLYQDSAATFMNMPQSIHRDPQGPSNWRISDLSQPSTVNHGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 MDMIKPDFQQIRRDKFRVEQMNDFPNTWTQQQHQNIRIPNNLDLIGILQNQISVPVQTDLYQDSAATFMNMPQSIHRDPQGPSNWRISDLSQPSTVNHGY 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G27 DQAGIRPNNVADLLSDHFSSRNQILDRPLYVGRDSIPQSSMIRRSEVSCLDDNQKGCVTVACSGTGNEILRSSYDQGSSSGSYRGEFSFLPSLENQSVAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 DQAGIRPNNVADLLSDHFSSRNQILDRPLYVGRDSIPQSSMIRRSEVSCLDDNQKGCVTVACSGTGNEILRSSYDQGSSSGSYRGEFSFLPSLENQSVAH 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G27 NASNWNHGPVNVTATSHTNSKKGFPLSLLSDIPPSRDVGNAAVLSTMNIHGPLGPFTGYASILKSSRFLEPAQKMLEEFCISYASKIISRSESTSMEDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 NASNWNHGPVNVTATSHTNSKKGFPLSLLSDIPPSRDVGNAAVLSTMNIHGPLGPFTGYASILKSSRFLEPAQKMLEEFCISYASKIISRSESTSMEDDD 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G27 DDDDNLSGFSSSSEPLEPKNRLKKAKLLFLQEEVCKWYKLYNHQLQTVMSSFNTVAGLNTATPYISLALKRTSRSFKALRTAIAEHVKQISSHSSNGNNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 DDDDNLSGFSSSSEPLEPKNRLKKAKLLFLQEEVCKWYKLYNHQLQTVMSSFNTVAGLNTATPYISLALKRTSRSFKALRTAIAEHVKQISSHSSNGNNN 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G27 NRFQKRQRSLIGNNVGFESQQQHIWRPQRGLPERAVAVLRAWLFDHFLHPYPTDSDKQMLATQTGLSRNQVSNWFINARVRLWKPMVEEIHTLETKAIKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 NRFQKRQRSLIGNNVGFESQQQHIWRPQRGLPERAVAVLRAWLFDHFLHPYPTDSDKQMLATQTGLSRNQVSNWFINARVRLWKPMVEEIHTLETKAIKN 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 AT2G27 ADTSHNIEPSNRPNTVSSPSHEQTLTGLSGTKRSRLEYMDMVGFNRGNVSLTLELRRGVDNVIQTQTQDHQFGTGSQMFHDFVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_054 ADTSHNIEPSNRPNTVSSPSHEQTLTGLSGTKRSRLEYMDMVGFNRGNVSLTLELRRGVDNVIQTQTQDHQFGTGSQMFHDFVG 510 520 530 540 550 560 570 580

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