◆◆◆RE_0553 detail◆◆◆

Code name	RE_0553
Locus	AT3G60390
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0420_アミノ酸配列70%以上一致
sequence	>RE_0553_945bp ATGAGTGAAAGAGATGATGGATTGGGGCTAAGTTTGAGCTTGAGTTTAGGTTTTAATCAAAAGGACCCGTCTTCGAGGTTAAATCCAATGCCTCTGGCTT CTTATGCATCTTCATCACACATGCAGCATATGCAGCAGAGCAATTATAACCATCCTCAAAAGATTCAGAACACTTGGATTAACATGTTTCAGTCATCAGA GAGAAACTCGGACATGAGATCGTTTCTCCGGGGAATAGACGTGAACAGAGCTCCATCGACGGTGGTGGTTGACGTGGAGGATGAAGGCGCCGGAGTTTCG TCTCCGAACAGCACCGTCTCAAGCGTGATGAGCGGGAAGAAGAGCGAGCGAGAGCTAATGGCTGCGGCAGGTGCAGTTGGAGGAGGTAGAGTAGAAGATA ATGAGATTGAGAGAGCTTCTTGCTCGCTCGGCGGTGGTAGCGACGATGAAGACGGTTGCGGGAACGGAGATGACAGTTCGAGGAAGAAACTCCGATTGTC TAAAGAACAAGCTTTGGTTCTTGAAGAAACTTTTAAAGAACATAGTACACTCAATCCGAAGCAAAAGATGGCTTTGGCTAAGCAATTGAATCTGAGGACG AGACAAGTTGAAGTGTGGTTCCAAAACCGAAGGGCAAGGACGAAGCTGAAGCAAACGGAAGTAGACTGTGAATATCTTAAGAGATGTTGCGAGAATCTAA CGGATGAGAATCGGAGATTGCAAAAGGAAGTGAGTGAGCTTAGGGCTTTAAAGCTTTCTCCACACTTATACATGCACATGAAACCTCCCACTACTCTCAC AATGTGTCCTTCTTGCGAGCGAGTCGCTGTTACGTCATCTTCGTCATCGGTGGCTCCTCCTGTGATGAATTCATCGTCTCCGATGGGTCCGATGAGTCCG TGGGCTGCCATGCCTCTACGGCAACGACCTGCTGCTGGTTCTCAT >RE_0553_translated MSERDDGLGLSLSLSLGFNQKDPSSRLNPMPLASYASSSHMQHMQQSNYNHPQKIQNTWINMFQSSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVS SPNSTVSSVMSGKKSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGCGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRT RQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPMGPMSP WAAMPLRQRPAAGSH
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 944/945 (99.9%)（アミノ酸配列で314/315 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G60 ATGAGTGAAAGAGATGATGGATTGGGGCTAAGTTTGAGCTTGAGTTTAGGTTTTAATCAAAAGGACCCGTCTTCGAGGTTAAATCCAATGCCTCTGGCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_055 ATGAGTGAAAGAGATGATGGATTGGGGCTAAGTTTGAGCTTGAGTTTAGGTTTTAATCAAAAGGACCCGTCTTCGAGGTTAAATCCAATGCCTCTGGCTT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G60 CTTATGCATCTTCATCACACATGCAGCATATGCAGCAGAGCAATTATAACCATCCTCAAAAGATTCAGAACACTTGGATTAACATGTTTCAGTCATCAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_055 CTTATGCATCTTCATCACACATGCAGCATATGCAGCAGAGCAATTATAACCATCCTCAAAAGATTCAGAACACTTGGATTAACATGTTTCAGTCATCAGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G60 GAGAAACTCGGACATGAGATCGTTTCTCCGGGGAATAGACGTGAACAGAGCTCCATCGACGGTGGTGGTTGACGTGGAGGATGAAGGCGCCGGAGTTTCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_055 GAGAAACTCGGACATGAGATCGTTTCTCCGGGGAATAGACGTGAACAGAGCTCCATCGACGGTGGTGGTTGACGTGGAGGATGAAGGCGCCGGAGTTTCG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G60 TCTCCGAACAGCACCGTCTCAAGCGTGATGAGCGGGAAGAAGAGCGAGCGAGAGCTAATGGCTGCGGCAGGTGCAGTTGGAGGAGGTAGAGTAGAAGATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_055 TCTCCGAACAGCACCGTCTCAAGCGTGATGAGCGGGAAGAAGAGCGAGCGAGAGCTAATGGCTGCGGCAGGTGCAGTTGGAGGAGGTAGAGTAGAAGATA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G60 ATGAGATTGAGAGAGCTTCTTGCTCGCTCGGCGGTGGTAGCGACGATGAAGACGGTAGCGGGAACGGAGATGACAGTTCGAGGAAGAAACTCCGATTGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: RE_055 ATGAGATTGAGAGAGCTTCTTGCTCGCTCGGCGGTGGTAGCGACGATGAAGACGGTTGCGGGAACGGAGATGACAGTTCGAGGAAGAAACTCCGATTGTC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G60 TAAAGAACAAGCTTTGGTTCTTGAAGAAACTTTTAAAGAACATAGTACACTCAATCCGAAGCAAAAGATGGCTTTGGCTAAGCAATTGAATCTGAGGACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_055 TAAAGAACAAGCTTTGGTTCTTGAAGAAACTTTTAAAGAACATAGTACACTCAATCCGAAGCAAAAGATGGCTTTGGCTAAGCAATTGAATCTGAGGACG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G60 AGACAAGTTGAAGTGTGGTTCCAAAACCGAAGGGCAAGGACGAAGCTGAAGCAAACGGAAGTAGACTGTGAATATCTTAAGAGATGTTGCGAGAATCTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_055 AGACAAGTTGAAGTGTGGTTCCAAAACCGAAGGGCAAGGACGAAGCTGAAGCAAACGGAAGTAGACTGTGAATATCTTAAGAGATGTTGCGAGAATCTAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G60 CGGATGAGAATCGGAGATTGCAAAAGGAAGTGAGTGAGCTTAGGGCTTTAAAGCTTTCTCCACACTTATACATGCACATGAAACCTCCCACTACTCTCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_055 CGGATGAGAATCGGAGATTGCAAAAGGAAGTGAGTGAGCTTAGGGCTTTAAAGCTTTCTCCACACTTATACATGCACATGAAACCTCCCACTACTCTCAC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G60 AATGTGTCCTTCTTGCGAGCGAGTCGCTGTTACGTCATCTTCGTCATCGGTGGCTCCTCCTGTGATGAATTCATCGTCTCCGATGGGTCCGATGAGTCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_055 AATGTGTCCTTCTTGCGAGCGAGTCGCTGTTACGTCATCTTCGTCATCGGTGGCTCCTCCTGTGATGAATTCATCGTCTCCGATGGGTCCGATGAGTCCG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 AT3G60 TGGGCTGCCATGCCTCTACGGCAACGACCTGCTGCTGGTTCTCAT ::::::::::::::::::::::::::::::::::::::::::::: RE_055 TGGGCTGCCATGCCTCTACGGCAACGACCTGCTGCTGGTTCTCAT 910 920 930 940 10 20 30 40 50 60 70 80 90 100 AT3G60 MSERDDGLGLSLSLSLGFNQKDPSSRLNPMPLASYASSSHMQHMQQSNYNHPQKIQNTWINMFQSSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_055 MSERDDGLGLSLSLSLGFNQKDPSSRLNPMPLASYASSSHMQHMQQSNYNHPQKIQNTWINMFQSSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVS 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G60 SPNSTVSSVMSGKKSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRT :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: RE_055 SPNSTVSSVMSGKKSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGCGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G60 RQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPMGPMSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_055 RQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPMGPMSP 210 220 230 240 250 260 270 280 290 300 310 AT3G60 WAAMPLRQRPAAGSH ::::::::::::::: RE_055 WAAMPLRQRPAAGSH 310

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