◆◆◆RE_0562 detail◆◆◆

Code name	RE_0562
Locus	AT4G32040
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列91.90%一致
comment	0420_アミノ酸配列70%以上一致
sequence	>RE_0562_1056bp ATGTCGTTTAACAGCTCCCACCTCCTTCCTCCACAAGAAGACCTTCCTCTCCGACACTTCACCGATCAATCACAGCAACCTCCGCCGCAGCGTCACTTCT CTGAAACACCTTCGCTTGTCACCGCCAGTTTCCTCAACCTCCCTACCACCCTTACCACTGCGGATTCCGATCTCGCTCCTCCGCACCGCAACGGAGACAA TTCCGTTGCTGATACAAACCCACGCTGGCTCTCCTTTCATTCGGAGATGCAAAATACTGGAGAAGTACGTTCTGAAGTTATCGACGGAGTCAACGCCGAT GGTGAAACGATACTCGGCGTTGTAGGAGGTGAAGATTGGCGGAGTGCTAGCTATAAGGCGGCGATTTTAAGACATCCGATGTACGAGCAGCTTCTTGCGG CTCACGTGGCTTGCCTTAGGGTTGCGACTCCCGTTGACCAGATTCCGAGGATCGATGCTCAGCTCAGTCAGTTGCATACCGTCGCCGCGAAATACTCCAC TCTTGGTGTGGTTGTTGACAACAAGGAACTTGATCATTTCATGTCACATTATGTAGTCTTGTTATGTTCATTTAAAGAACAACTCCAACACCACGTTTGT GTCCATGCAATGGAAGCCATTACGGCTTGTTGGGAGATTGAACAATCACTGCAATCCCTAACTGGAGTTTCTCCAAGTGAAAGTAATGGTAAGACAATGT CGGATGATGAAGATGATAATCAAGTAGAGAGCGAGGTGAACATGTTTGATGGAAGTTTGGACGGTTCAGATTGCTTGATGGGGTTTGGTCCTCTTGTTCC AACCGAGAGAGAGAGATCTTTGATGGAACGTGTGAAGAAAGAACTGAAGCATGAGCTTAAACAGGGTTTCAAAGAGAAGATTGTGGACATAAGAGAAGAG ATAATGAGGAAGAGAAGGGCGGGAAAGTTGCCAGGAGATACGACTTCTGTACTCAAAGAATGGTGGCGAACTCACTCGAAATGGCCATACCCAACTGAGG AAGATAAGGCAAAACTGGTTCAAGAAACCGGTTTGCAGTTGAAACAGATCAACAAT >RE_0562_translated MSFNSSHLLPPQEDLPLRHFTDQSQQPPPQRHFSETPSLVTASFLNLPTTLTTADSDLAPPHRNGDNSVADTNPRWLSFHSEMQNTGEVRSEVIDGVNAD GETILGVVGGEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTLGVVVDNKELDHFMSHYVVLLCSFKEQLQHHVC VHAMEAITACWEIEQSLQSLTGVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELKQGFKEKIVDIREE IMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINN
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1055/1149 (91.8%)（アミノ酸配列で352/383 (91.9%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G32 ATGTCGTTTAACAGCTCCCACCTCCTTCCTCCACAAGAAGACCTTCCTCTCCGACACTTCACCGATCAATCACAGCAACCTCCGCCGCAGCGTCACTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 ATGTCGTTTAACAGCTCCCACCTCCTTCCTCCACAAGAAGACCTTCCTCTCCGACACTTCACCGATCAATCACAGCAACCTCCGCCGCAGCGTCACTTCT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G32 CTGAAACACCTTCGCTTGTCACCGCCAGTTTCCTCAACCTCCCTACCACCCTTACCACTGCGGATTCCGATCTCGCTCCTCCGCACCGCAACGGAGACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 CTGAAACACCTTCGCTTGTCACCGCCAGTTTCCTCAACCTCCCTACCACCCTTACCACTGCGGATTCCGATCTCGCTCCTCCGCACCGCAACGGAGACAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G32 TTCCGTTGCTGATACAAACCCACGCTGGCTCTCCTTTCATTCGGAGATGCAAAATACTGGAGAAGTACGTTCTGAAGTTATCGACGGAGTCAACGCCGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 TTCCGTTGCTGATACAAACCCACGCTGGCTCTCCTTTCATTCGGAGATGCAAAATACTGGAGAAGTACGTTCTGAAGTTATCGACGGAGTCAACGCCGAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G32 GGTGAAACGATACTCGGCGTTGTAGGAGGTGAAGATTGGCGGAGTGCTAGCTATAAGGCGGCGATTTTAAGACATCCGATGTACGAGCAGCTTCTTGCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 GGTGAAACGATACTCGGCGTTGTAGGAGGTGAAGATTGGCGGAGTGCTAGCTATAAGGCGGCGATTTTAAGACATCCGATGTACGAGCAGCTTCTTGCGG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G32 CTCACGTGGCTTGCCTTAGGGTTGCGACTCCCGTTGACCAGATTCCGAGGATCGATGCTCAGCTCAGTCAGTTGCATACCGTCGCCGCGAAATACTCCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 CTCACGTGGCTTGCCTTAGGGTTGCGACTCCCGTTGACCAGATTCCGAGGATCGATGCTCAGCTCAGTCAGTTGCATACCGTCGCCGCGAAATACTCCAC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G32 TCTTGGTGTGGTTGTTGACAACAAGGAACTTGATCATTTCATGTCACATTATGTTGTCTTGTTATGTTCATTTAAAGAACAACTCCAACACCACGTTTGT :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: RE_056 TCTTGGTGTGGTTGTTGACAACAAGGAACTTGATCATTTCATGTCACATTATGTAGTCTTGTTATGTTCATTTAAAGAACAACTCCAACACCACGTTTGT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G32 GTCCATGCAATGGAAGCCATTACGGCTTGTTGGGAGATTGAACAATCACTGCAATCCCTAACTGGAGTTTCTCCAAGTGAAAGTAATGGTAAGACAATGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 GTCCATGCAATGGAAGCCATTACGGCTTGTTGGGAGATTGAACAATCACTGCAATCCCTAACTGGAGTTTCTCCAAGTGAAAGTAATGGTAAGACAATGT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G32 CGGATGATGAAGATGATAATCAAGTAGAGAGCGAGGTGAACATGTTTGATGGAAGTTTGGACGGTTCAGATTGCTTGATGGGGTTTGGTCCTCTTGTTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 CGGATGATGAAGATGATAATCAAGTAGAGAGCGAGGTGAACATGTTTGATGGAAGTTTGGACGGTTCAGATTGCTTGATGGGGTTTGGTCCTCTTGTTCC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G32 AACCGAGAGAGAGAGATCTTTGATGGAACGTGTGAAGAAAGAACTGAAGCATGAGCTTAAACAGGGTTTCAAAGAGAAGATTGTGGACATAAGAGAAGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 AACCGAGAGAGAGAGATCTTTGATGGAACGTGTGAAGAAAGAACTGAAGCATGAGCTTAAACAGGGTTTCAAAGAGAAGATTGTGGACATAAGAGAAGAG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G32 ATAATGAGGAAGAGAAGGGCGGGAAAGTTGCCAGGAGATACGACTTCTGTACTCAAAGAATGGTGGCGAACTCACTCGAAATGGCCATACCCAACTGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 ATAATGAGGAAGAGAAGGGCGGGAAAGTTGCCAGGAGATACGACTTCTGTACTCAAAGAATGGTGGCGAACTCACTCGAAATGGCCATACCCAACTGAGG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G32 AAGATAAGGCAAAACTGGTTCAAGAAACCGGTTTGCAGTTGAAACAGATCAACAATTGGTTCATCAACCAGAGGAAAAGAAACTGGAACAGCAACTCTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 AAGATAAGGCAAAACTGGTTCAAGAAACCGGTTTGCAGTTGAAACAGATCAACAAT-------------------------------------------- 1010 1020 1030 1040 1050 1110 1120 1130 1140 AT4G32 CACGTCATCTACTCTCACCAAGAACAAACGTAAACGGACCGGGAAGTCG RE_056 ------------------------------------------------- 10 20 30 40 50 60 70 80 90 100 AT4G32 MSFNSSHLLPPQEDLPLRHFTDQSQQPPPQRHFSETPSLVTASFLNLPTTLTTADSDLAPPHRNGDNSVADTNPRWLSFHSEMQNTGEVRSEVIDGVNAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 MSFNSSHLLPPQEDLPLRHFTDQSQQPPPQRHFSETPSLVTASFLNLPTTLTTADSDLAPPHRNGDNSVADTNPRWLSFHSEMQNTGEVRSEVIDGVNAD 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G32 GETILGVVGGEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTLGVVVDNKELDHFMSHYVVLLCSFKEQLQHHVC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 GETILGVVGGEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTLGVVVDNKELDHFMSHYVVLLCSFKEQLQHHVC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G32 VHAMEAITACWEIEQSLQSLTGVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELKQGFKEKIVDIREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 VHAMEAITACWEIEQSLQSLTGVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELKQGFKEKIVDIREE 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 AT4G32 IMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWNSNSSTSSTLTKNKRKRTGKS :::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 IMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINN------------------------------- 310 320 330 340 350

このページのTOPに戻る