◆◆◆RE_0564 detail◆◆◆

Code name	RE_0564
Locus	AT4G32980
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.20%一致
comment	0520_20080229_0564_FRW1W2_5555
sequence	>RE_0564_1419bp ATGGACAACAACAACAACAACAACACTTTTAGTTCTCTGGATAATGTCATGACTAACCAAAATCCTCTTCTCATGGATTTTATGCCTTCAAGAGAAGATT CAACTTCATTCTCAACAATGCTTCCATGGAATACCATCAGATCAGATCCTCTACAAATGGGTGGCTTTGATATTTTCAATTCTATGCTGACTAACAAATA CTTATCATCTTCTCCACGGTCTATCGATGTTCAAGATAACCGCAATGTTGAGTTCATGGCTCCTCCTCCTCATCCTCCTCCACTTCATCCTTTGGATCAT TTAGGACACTATGATGATTCCTCAAACAACATGTGGGGTTTTGAAGCAAATAGTGAGTTTCAGGCATTTTCAGGTGTAGTTGGTCCAAGTGAACCAATGA TGTCTACATTCGGTGAAGAAGATTTCCCGTTTCTAATTTCGAATAAAAGAAACAATGAGCTTTCATTGAGTCTTGCATCAGATGTTTCTGATGAATGCTC GGAGATAAGTCTTTGTGCAGCTACAAGATTAGCCTCAGAGCAAGCTTCTTGCAGCAGCAAAGACATTTCTAATAACGTTGTTACTCAAGGTTTCTCTCAA CTTATATTTGGCTCAAAATACCTTCACTCTGTTCAAGAAATACTATCTCATTTCGCCGCATACTCGCTCGATTATTCATCTCGAGGAACCGAGTCAGGAG CTGCTAGTTCAGCCTTTACTTCACGTTTTGAGAATATAACTGAGTTTCTTGATGGTGATTCTAATAACTCGGAGGCGGGTTTCGGATCTACATTTCAAAG GAGAGCATTAGAAGCAAAGAAAACCCATCTCTTGGATCTTCTTCAAATGGTGGATGATCGATATAGTCATTGCGTAGATGAGATTCATACGGTTATATCA GCGTTCCATGCTGCAACCGAGTTAGATCCACAGTTACACACCCGGTTTGCCCTCCAAACCGTTTCCTTCTTATACAAGAACCTGAGAGAGAGAATCTGCA AGAAGATAATCTCTATGGGATCTGTATTGGAGAGAGGCAAAGACAAGACTCAAGAAACCTCTATGTTCCACCAGCATTGCCTTCTTCAGCAGCTGAAACG AAGGAACCATCAGATTTGGAGACCTCAACGAGGTTTGCCTAAGAAATCTGTTTCGGTTCTACGGAATTGGATGTTCCAAAACTTCCTTCACCCTTACCCG AAAGATTCGGAGAAACATCTTCTAGCTATACGAAGTGGCTTGACAAGAAGTCAGGTATCAAACTGGTTTATAAATGCGCGGGTTAGGCTATGGAAGCCGA TGATAGAAGAGATGTATGCGGAAATGAACAAGAGGAAGCTCAATAACAGTCACATTCAACCCAACGGACCAACTCTTCGAATGCCAAAATCCGTTATGAT GAGCCAAGCAATGCATAAA >RE_0564_translated MDNNNNNNTFSSLDNVMTNQNPLLMDFMPSREDSTSFSTMLPWNTIRSDPLQMGGFDIFNSMLTNKYLSSSPRSIDVQDNRNVEFMAPPPHPPPLHPLDH LGHYDDSSNNMWGFEANSEFQAFSGVVGPSEPMMSTFGEEDFPFLISNKRNNELSLSLASDVSDECSEISLCAATRLASEQASCSSKDISNNVVTQGFSQ LIFGSKYLHSVQEILSHFAAYSLDYSSRGTESGAASSAFTSRFENITEFLDGDSNNSEAGFGSTFQRRALEAKKTHLLDLLQMVDDRYSHCVDEIHTVIS AFHAATELDPQLHTRFALQTVSFLYKNLRERICKKIISMGSVLERGKDKTQETSMFHQHCLLQQLKRRNHQIWRPQRGLPKKSVSVLRNWMFQNFLHPYP KDSEKHLLAIRSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKLNNSHIQPNGPTLRMPKSVMMSQAMHK
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1414/1419 (99.6%)（アミノ酸配列で469/473 (99.2%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G32 ATGGACAACAACAACAACAACAACACTTTTAGTTCTCTGGATAATGTCATGACTAACCAAAATCCTCTTCTCATGGATTTTATACCTTCAAGAGAAGATT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: RE_056 ATGGACAACAACAACAACAACAACACTTTTAGTTCTCTGGATAATGTCATGACTAACCAAAATCCTCTTCTCATGGATTTTATGCCTTCAAGAGAAGATT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G32 CAACTTCATTCTCAACAATGCTTCCATGGAATACCATCAGATCAGATCCTCTACAAATGGGTGGCTTTGATATTTTCAATTCTATGCTGACTAACAAATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 CAACTTCATTCTCAACAATGCTTCCATGGAATACCATCAGATCAGATCCTCTACAAATGGGTGGCTTTGATATTTTCAATTCTATGCTGACTAACAAATA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G32 CTTATCATCTTCTCCACGGTCTATCGATGTTCAAGATAACCGCAATGTTGAGTTCATGGCTCCTCCTCCTCATCCTCCTCCACTTCATCCTTTGGATCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 CTTATCATCTTCTCCACGGTCTATCGATGTTCAAGATAACCGCAATGTTGAGTTCATGGCTCCTCCTCCTCATCCTCCTCCACTTCATCCTTTGGATCAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G32 TTAAGACACTATGATGATTCCTCAAACAACATGTGGGGTTTTGAAGCAAATAGTGAGTTTCAGGCATTTTCAGGTGTAGTTGGTCCAAGTGAACCAATGA ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 TTAGGACACTATGATGATTCCTCAAACAACATGTGGGGTTTTGAAGCAAATAGTGAGTTTCAGGCATTTTCAGGTGTAGTTGGTCCAAGTGAACCAATGA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G32 TGTCTACATTCGGTGAAGAAGATTTCCCGTTTCTAATTTCGAATAAAAGAAACAATGAGCTTTCATTGAGTCTTGCATCAGATGTTTCTGATGAATGCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 TGTCTACATTCGGTGAAGAAGATTTCCCGTTTCTAATTTCGAATAAAAGAAACAATGAGCTTTCATTGAGTCTTGCATCAGATGTTTCTGATGAATGCTC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G32 GGAGATAAGTCTTTGTGCAGCTACAAGATTAGCCTCAGAGCAAGCTTCTTGCAGCAGCAAAGACATTTCTAATAACGTTGTTACTCAAGGTTTCTCTCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 GGAGATAAGTCTTTGTGCAGCTACAAGATTAGCCTCAGAGCAAGCTTCTTGCAGCAGCAAAGACATTTCTAATAACGTTGTTACTCAAGGTTTCTCTCAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G32 CTTATATTTGGCTCAAAATACCTTCACTCTGTTCAAGAAATACTATCTCATTTCGCCGCATACTCGCTCGATTATTCATCTCGAGGAACCGAGTCAGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 CTTATATTTGGCTCAAAATACCTTCACTCTGTTCAAGAAATACTATCTCATTTCGCCGCATACTCGCTCGATTATTCATCTCGAGGAACCGAGTCAGGAG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G32 CTGCTAGTTCAGCCTTTACTTCACGTTTTGAGAATATAACTGAGTTTCTTGATGGTGATTCTAATAACTCGGAGGCGGGTTTCGGATCTACATTTCAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 CTGCTAGTTCAGCCTTTACTTCACGTTTTGAGAATATAACTGAGTTTCTTGATGGTGATTCTAATAACTCGGAGGCGGGTTTCGGATCTACATTTCAAAG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G32 GAGAGCATTAGAAGCAAAGAAAACCCATCTCTTGGATCTTCTTCAAATGGTGGATGATCGATATAGTCATTGCGTAGATGAGATTCATACGGTTATATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 GAGAGCATTAGAAGCAAAGAAAACCCATCTCTTGGATCTTCTTCAAATGGTGGATGATCGATATAGTCATTGCGTAGATGAGATTCATACGGTTATATCA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G32 GCGTTCCATGCTGCAACCGAGTTAGATCCACAGTTACACACCCGGTTTGCCCTCCAAACCGTTTCCTTCTTATACAAGAACCTGAGAGAGAGAATCTGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 GCGTTCCATGCTGCAACCGAGTTAGATCCACAGTTACACACCCGGTTTGCCCTCCAAACCGTTTCCTTCTTATACAAGAACCTGAGAGAGAGAATCTGCA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G32 AGAAGATAATCTCTATGGGATCTGTATTGGAGAGAGGCAAAGACAAGACTCAAGAAACCTCTATGTTCCACCAGCATTGCCTTCTTCAGCAGCTGAAACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 AGAAGATAATCTCTATGGGATCTGTATTGGAGAGAGGCAAAGACAAGACTCAAGAAACCTCTATGTTCCACCAGCATTGCCTTCTTCAGCAGCTGAAACG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G32 AAAGAACCATCAGATTTGGAGACCTCAACGAGGTTTGCCTGAGAAATCTGTTTCGGTTCTACGGAATTGGATGTTCCAAAACTTCCTTCACCCTTACCCG :: ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 AAGGAACCATCAGATTTGGAGACCTCAACGAGGTTTGCCTAAGAAATCTGTTTCGGTTCTACGGAATTGGATGTTCCAAAACTTCCTTCACCCTTACCCG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G32 AAAGATTCGGAGAAACATCTTCTAGCTATACGAAGTGGCTTGACAAGAAGTCAGGTATCAAACTGGTTTATAAATGCGCGGGTTAGGCTATGGAAGCCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 AAAGATTCGGAGAAACATCTTCTAGCTATACGAAGTGGCTTGACAAGAAGTCAGGTATCAAACTGGTTTATAAATGCGCGGGTTAGGCTATGGAAGCCGA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT4G32 TGATAGAAGAGATGTATGCGGAAATGAACAAGAGGAAGCTCAATAACAGTCACATTCAACCCAACGGACCAACTCTTCGAATGCCAAAATCTGTTATGAT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: RE_056 TGATAGAAGAGATGTATGCGGAAATGAACAAGAGGAAGCTCAATAACAGTCACATTCAACCCAACGGACCAACTCTTCGAATGCCAAAATCCGTTATGAT 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 AT4G32 GAGCCAAGCAATGCATAAA ::::::::::::::::::: RE_056 GAGCCAAGCAATGCATAAA 1410 10 20 30 40 50 60 70 80 90 100 AT4G32 MDNNNNNNTFSSLDNVMTNQNPLLMDFIPSREDSTSFSTMLPWNTIRSDPLQMGGFDIFNSMLTNKYLSSSPRSIDVQDNRNVEFMAPPPHPPPLHPLDH :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 MDNNNNNNTFSSLDNVMTNQNPLLMDFMPSREDSTSFSTMLPWNTIRSDPLQMGGFDIFNSMLTNKYLSSSPRSIDVQDNRNVEFMAPPPHPPPLHPLDH 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G32 LRHYDDSSNNMWGFEANSEFQAFSGVVGPSEPMMSTFGEEDFPFLISNKRNNELSLSLASDVSDECSEISLCAATRLASEQASCSSKDISNNVVTQGFSQ : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 LGHYDDSSNNMWGFEANSEFQAFSGVVGPSEPMMSTFGEEDFPFLISNKRNNELSLSLASDVSDECSEISLCAATRLASEQASCSSKDISNNVVTQGFSQ 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G32 LIFGSKYLHSVQEILSHFAAYSLDYSSRGTESGAASSAFTSRFENITEFLDGDSNNSEAGFGSTFQRRALEAKKTHLLDLLQMVDDRYSHCVDEIHTVIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 LIFGSKYLHSVQEILSHFAAYSLDYSSRGTESGAASSAFTSRFENITEFLDGDSNNSEAGFGSTFQRRALEAKKTHLLDLLQMVDDRYSHCVDEIHTVIS 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G32 AFHAATELDPQLHTRFALQTVSFLYKNLRERICKKIISMGSVLERGKDKTQETSMFHQHCLLQQLKRKNHQIWRPQRGLPEKSVSVLRNWMFQNFLHPYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::.::::::::::::::::::: RE_056 AFHAATELDPQLHTRFALQTVSFLYKNLRERICKKIISMGSVLERGKDKTQETSMFHQHCLLQQLKRRNHQIWRPQRGLPKKSVSVLRNWMFQNFLHPYP 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 AT4G32 KDSEKHLLAIRSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKLNNSHIQPNGPTLRMPKSVMMSQAMHK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_056 KDSEKHLLAIRSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKLNNSHIQPNGPTLRMPKSVMMSQAMHK 410 420 430 440 450 460 470

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