| Code name | RE_0566 | |||
|---|---|---|---|---|
| Locus | AT4G35550 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0420_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0566_804bp ATGATGGAATGGGATAATCAGCTACAACCCAATAACCATCACTCTTCTAATCTTCAAGGGATCGACGTTAATGGCGGCTCCGGCGCCGGAGGAGGAATGT ACGTGAAGGTGATGACCGATGAGCAGTATGAAACTCTCAGGAAACAGATTGCTATTTACGGCACCATTTGTGAGCGTCTTGTTGAGATGCATAAAACTCT CACTGCTCAACAAGATCTTGCAGGAGGGAGAATGGGAGGACTATATGCAGACCCAATGATGTCATCTTTAGGTCATAAGATGACAGCTAGACCGAGGTGG ACTCCTACGCCAGTCCAGCTTCAGATTCTGGAACGTATATTCGATCAAGGCACGGGAACACCGAGCAAGCAGAAGATCAAAGACATAACAGAAGAGCTGA GCCAACACGGCCAGATTGCTGAACAAAATGTCTATAACTGGTTCCAGAACCGACGTGCTCGATCCAAGAGGAAGCAGCATGGTGGAGGTTCTTCTGGAAA TAATAATGGTGAGTCTGAGGTAGAGACTGAAGTTGAAGCATTGAATGAGAAGAGAGTAGTGAGGCCAGAGAGTCTTCTTGGTCTTCCAGATGGAAATAGC AACAATAATGGGTTAGGGACAACAACAGCAACAACTACTGCTCCTAGGCCTGAAGATCTTTGCTTTCAGAGCCCTGAGATTAGCTCAGACCTTCACTTGC TAGATGTTCTATCAAACCCAAGGGATGAGCATCTTGTTGGAAAGATGGGACTGGCGGAAAGTTACAACCTTTATGATCATGTTGAAGATTATGGCATGTC AGGC >RE_0566_translated MMEWDNQLQPNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDLAGGRMGGLYADPMMSSLGHKMTARPRW TPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQHGGGSSGNNNGESEVETEVEALNEKRVVRPESLLGLPDGNS NNNGLGTTTATTTAPRPEDLCFQSPEISSDLHLLDVLSNPRDEHLVGKMGLAESYNLYDHVEDYGMSG |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 803/804 (99.9%)（アミノ酸配列で267/268 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G35 ATGATGGAATGGGATAATCAGCTACAACCCAATAACCATCACTCTTCTAATCTTCAAGGGATCGACGTTAATGGCGGCTCCGGCGCCGGAGGAGGAATGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 ATGATGGAATGGGATAATCAGCTACAACCCAATAACCATCACTCTTCTAATCTTCAAGGGATCGACGTTAATGGCGGCTCCGGCGCCGGAGGAGGAATGT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G35 ACGTGAAGGTGATGACCGATGAGCAGTATGAAACTCTCAGGAAACAGATTGCTATTTACGGCACCATTTGTGAGCGTCTTGTTGAGATGCATAAAACTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 ACGTGAAGGTGATGACCGATGAGCAGTATGAAACTCTCAGGAAACAGATTGCTATTTACGGCACCATTTGTGAGCGTCTTGTTGAGATGCATAAAACTCT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G35 CACTGCTCAACAAGATCTTGCAGGAGGGAGAATGGGAGGACTATATGCAGACCCAATGATGTCATCTTTAGGTCATAAGATGACAGCTAGACAGAGGTGG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
RE_056 CACTGCTCAACAAGATCTTGCAGGAGGGAGAATGGGAGGACTATATGCAGACCCAATGATGTCATCTTTAGGTCATAAGATGACAGCTAGACCGAGGTGG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G35 ACTCCTACGCCAGTCCAGCTTCAGATTCTGGAACGTATATTCGATCAAGGCACGGGAACACCGAGCAAGCAGAAGATCAAAGACATAACAGAAGAGCTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 ACTCCTACGCCAGTCCAGCTTCAGATTCTGGAACGTATATTCGATCAAGGCACGGGAACACCGAGCAAGCAGAAGATCAAAGACATAACAGAAGAGCTGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G35 GCCAACACGGCCAGATTGCTGAACAAAATGTCTATAACTGGTTCCAGAACCGACGTGCTCGATCCAAGAGGAAGCAGCATGGTGGAGGTTCTTCTGGAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 GCCAACACGGCCAGATTGCTGAACAAAATGTCTATAACTGGTTCCAGAACCGACGTGCTCGATCCAAGAGGAAGCAGCATGGTGGAGGTTCTTCTGGAAA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G35 TAATAATGGTGAGTCTGAGGTAGAGACTGAAGTTGAAGCATTGAATGAGAAGAGAGTAGTGAGGCCAGAGAGTCTTCTTGGTCTTCCAGATGGAAATAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 TAATAATGGTGAGTCTGAGGTAGAGACTGAAGTTGAAGCATTGAATGAGAAGAGAGTAGTGAGGCCAGAGAGTCTTCTTGGTCTTCCAGATGGAAATAGC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT4G35 AACAATAATGGGTTAGGGACAACAACAGCAACAACTACTGCTCCTAGGCCTGAAGATCTTTGCTTTCAGAGCCCTGAGATTAGCTCAGACCTTCACTTGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 AACAATAATGGGTTAGGGACAACAACAGCAACAACTACTGCTCCTAGGCCTGAAGATCTTTGCTTTCAGAGCCCTGAGATTAGCTCAGACCTTCACTTGC
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT4G35 TAGATGTTCTATCAAACCCAAGGGATGAGCATCTTGTTGGAAAGATGGGACTGGCGGAAAGTTACAACCTTTATGATCATGTTGAAGATTATGGCATGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 TAGATGTTCTATCAAACCCAAGGGATGAGCATCTTGTTGGAAAGATGGGACTGGCGGAAAGTTACAACCTTTATGATCATGTTGAAGATTATGGCATGTC
710 720 730 740 750 760 770 780 790 800
AT4G35 AGGC
::::
RE_056 AGGC
10 20 30 40 50 60 70 80 90 100
AT4G35 MMEWDNQLQPNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDLAGGRMGGLYADPMMSSLGHKMTARQRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
RE_056 MMEWDNQLQPNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDLAGGRMGGLYADPMMSSLGHKMTARPRW
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G35 TPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQHGGGSSGNNNGESEVETEVEALNEKRVVRPESLLGLPDGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 TPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQHGGGSSGNNNGESEVETEVEALNEKRVVRPESLLGLPDGNS
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260
AT4G35 NNNGLGTTTATTTAPRPEDLCFQSPEISSDLHLLDVLSNPRDEHLVGKMGLAESYNLYDHVEDYGMSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 NNNGLGTTTATTTAPRPEDLCFQSPEISSDLHLLDVLSNPRDEHLVGKMGLAESYNLYDHVEDYGMSG
210 220 230 240 250 260
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